Project: 2671 (Run 21, Clone 0, Gen 159)

[BrokenWolf]

This WU is bad and keeps on trying to D/L.

Error:

Code: Select all

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22911 system in water'
40000004 steps,  80000.0 ps (continuing from step 39750004,  79500.0 ps).

t = 79500.012 ps: Water molecule starting at atom 81922 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 79500.014 ps: Water molecule starting at atom 109729 can not be settled.
Check for bad contacts and/or reduce the timestep.
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit

BW

[Mactin]

I have now received 7 time this WU and it has failed the exact same way every time : Project: 2671 (Run 21, Clone 0, Gen 159)
5 times today (Jan 14) and two times on Jan 10.

Code: Select all

[21:21:46] Working on Unit 09 [January 14 21:21:46]
[21:21:46] + Working ...
[21:21:46] 
[21:21:46] *------------------------------*
[21:21:46] Folding@Home Gromacs SMP Core
[21:21:46] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[21:21:46] 
[21:21:46] Preparing to commence simulation
[21:21:46] - Ensuring status. Please wait.
[21:21:56] - Assembly optimizations manually forced on.
[21:21:56] - Not checking prior termination.
[21:21:57] - Expanded 4831984 -> 24041389 (decompressed 497.5 percent)
[21:21:57] Called DecompressByteArray: compressed_data_size=4831984 data_size=24041389, decompressed_data_size=24041389 diff=0
[21:21:58] - Digital signature verified
[21:21:58] 
[21:21:58] Project: 2671 (Run 21, Clone 0, Gen 159)
[21:21:58] 
[21:21:58] Assembly optimizations on if available.
[21:21:58] Entering M.D.
[21:22:04] Multi-core optimizations on
[21:22:07] Completed 0 out of 250000 steps  (0%)
[21:22:13] CoreStatus = 0 (0)
[21:22:13] Client-core communications error: ERROR 0x0
[21:22:13] Deleting current work unit & continuing...
[21:22:26] - Preparing to get new work unit...
[21:22:26] + Attempting to get work packet
[21:22:26] - Connecting to assignment server
[21:22:27] - Successful: assigned to (171.67.108.24).
[21:22:27] + News From Folding@Home: Welcome to Folding@Home
[21:22:27] Loaded queue successfully.
[21:22:39] + Closed connections
[21:22:44] 
[21:22:44] + Processing work unit
[21:22:44] Core required: FahCore_a2.exe
[21:22:44] Core found.
[21:22:44] Working on Unit 00 [January 14 21:22:44]
[21:22:44] + Working ...
[21:22:44] 
[21:22:44] *------------------------------*
[21:22:44] Folding@Home Gromacs SMP Core
[21:22:44] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[21:22:44] 
[21:22:44] Preparing to commence simulation
[21:22:44] - Ensuring status. Please wait.
[21:22:53] - Assembly optimizations manually forced on.
[21:22:53] - Not checking prior termination.
[21:22:54] - Expanded 4831984 -> 24041389 (decompressed 497.5 percent)
[21:22:54] Called DecompressByteArray: compressed_data_size=4831984 data_size=24041389, decompressed_data_size=24041389 diff=0
[21:22:54] - Digital signature verified
[21:22:54] 
[21:22:54] Project: 2671 (Run 21, Clone 0, Gen 159)
[21:22:54] 
[21:22:55] Assembly optimizations on if available.
[21:22:55] Entering M.D.
[21:23:02] Multi-core optimizations on
[21:23:04] Completed 0 out of 250000 steps  (0%)
[21:23:09] CoreStatus = 0 (0)
[21:23:09] Client-core communications error: ERROR 0x0
[21:23:09] Deleting current work unit & continuing...
[21:23:23] - Preparing to get new work unit...
[21:23:23] + Attempting to get work packet
[21:23:23] - Connecting to assignment server
[21:23:23] - Successful: assigned to (171.67.108.24).
[21:23:23] + News From Folding@Home: Welcome to Folding@Home
[21:23:23] Loaded queue successfully.
[21:23:36] + Closed connections
[21:23:41] 
[21:23:41] + Processing work unit
[21:23:41] Core required: FahCore_a2.exe
[21:23:41] Core found.
[21:23:41] Working on Unit 01 [January 14 21:23:41]
[21:23:41] + Working ...
[21:23:41] 
[21:23:41] *------------------------------*
[21:23:41] Folding@Home Gromacs SMP Core
[21:23:41] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[21:23:41] 
[21:23:41] Preparing to commence simulation
[21:23:41] - Ensuring status. Please wait.
[21:23:50] - Assembly optimizations manually forced on.
[21:23:50] - Not checking prior termination.
[21:23:51] - Expanded 4831984 -> 24041389 (decompressed 497.5 percent)
[21:23:51] Called DecompressByteArray: compressed_data_size=4831984 data_size=24041389, decompressed_data_size=24041389 diff=0
[21:23:51] - Digital signature verified
[21:23:51] 
[21:23:51] Project: 2671 (Run 21, Clone 0, Gen 159)
[21:23:51] 
[21:23:51] Assembly optimizations on if available.
[21:23:51] Entering M.D.
[21:23:58] Multi-core optimizations on
[21:24:01] Completed 0 out of 250000 steps  (0%)
[21:24:06] CoreStatus = 0 (0)
[21:24:06] Client-core communications error: ERROR 0x0
[21:24:06] - Attempting to download new core...
[21:24:06] + Downloading new core: FahCore_a2.exe
[21:24:06] + 10240 bytes downloaded
[21:24:06] + 20480 bytes downloaded
[21:24:06] + 30720 bytes downloaded

[bruce]

This trajectory has been suspended.