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[10:35:55]
[10:35:55] *------------------------------*
[10:35:55] Folding@Home Gromacs SMP Core
[10:35:55] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[10:35:55]
[10:35:55] Preparing to commence simulation
[10:35:55] - Ensuring status. Please wait.
[10:36:05] - Looking at optimizations...
[10:36:05] - Working with standard loops on this execution.
[10:36:05] - Files status OK
[10:36:06] - Expanded 4838061 -> 24026141 (decompressed 496.6 percent)
[10:36:06] Called DecompressByteArray: compressed_data_size=4838061 data_size=24026141, decompressed_data_size=24026141 diff=0
[10:36:06] - Digital signature verified
[10:36:06]
[10:36:06] Project: 2677 (Run 31, Clone 3, Gen 9)
[10:36:06]
[10:36:06] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=computenode
NNODES=4, MYRANK=2, HOSTNAME=computenode
NNODES=4, MYRANK=3, HOSTNAME=computenode
NNODES=4, MYRANK=0, HOSTNAME=computenode
NODEID=0 argc=20
NODEID=2 argc=20
NODEID=1 argc=20
NODEID=3 argc=20
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.0.99_development_20090307 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_06.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 64
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22860 system in water'
2500000 steps, 5000.0 ps (continuing from step 2250000, 4500.0 ps).
[10:36:16] Completed 0 out of 250000 steps (0%)
[10:44:49] Completed 2500 out of 250000 steps (1%)
[10:53:25] Completed 5000 out of 250000 steps (2%)
[11:02:02] Completed 7500 out of 250000 steps (3%)
[11:10:42] Completed 10000 out of 250000 steps (4%)
[11:19:22] Completed 12500 out of 250000 steps (5%)
[11:28:03] Completed 15000 out of 250000 steps (6%)
[11:36:43] Completed 17500 out of 250000 steps (7%)
[11:45:21] Completed 20000 out of 250000 steps (8%)
[11:54:00] Completed 22500 out of 250000 steps (9%)
[12:02:39] Completed 25000 out of 250000 steps (10%)
[12:11:17] Completed 27500 out of 250000 steps (11%)
[12:19:55] Completed 30000 out of 250000 steps (12%)
[12:28:35] Completed 32500 out of 250000 steps (13%)
[12:37:11] Completed 35000 out of 250000 steps (14%)
[12:45:46] Completed 37500 out of 250000 steps (15%)
[12:54:22] Completed 40000 out of 250000 steps (16%)
[13:02:57] Completed 42500 out of 250000 steps (17%)
[13:11:33] Completed 45000 out of 250000 steps (18%)
[13:20:10] Completed 47500 out of 250000 steps (19%)
[13:28:46] Completed 50000 out of 250000 steps (20%)
[13:37:23] Completed 52500 out of 250000 steps (21%)
[13:45:59] Completed 55000 out of 250000 steps (22%)
[13:54:36] Completed 57500 out of 250000 steps (23%)
[14:03:12] Completed 60000 out of 250000 steps (24%)
[14:11:49] Completed 62500 out of 250000 steps (25%)
[14:20:25] Completed 65000 out of 250000 steps (26%)
[14:29:01] Completed 67500 out of 250000 steps (27%)
[14:37:38] Completed 70000 out of 250000 steps (28%)
[14:46:15] Completed 72500 out of 250000 steps (29%)
[14:54:51] Completed 75000 out of 250000 steps (30%)
[15:03:29] Completed 77500 out of 250000 steps (31%)
[15:12:05] Completed 80000 out of 250000 steps (32%)
[15:20:42] Completed 82500 out of 250000 steps (33%)
[15:29:21] Completed 85000 out of 250000 steps (34%)
[15:38:00] Completed 87500 out of 250000 steps (35%)
[15:46:40] Completed 90000 out of 250000 steps (36%)
[15:55:20] Completed 92500 out of 250000 steps (37%)
[16:03:59] Completed 95000 out of 250000 steps (38%)
[16:12:39] Completed 97500 out of 250000 steps (39%)
[16:21:17] Completed 100000 out of 250000 steps (40%)
[16:29:54] Completed 102500 out of 250000 steps (41%)
[16:29:55] - Autosending finished units... [May 23 16:29:55 UTC]
[16:29:55] Trying to send all finished work units
[16:29:55] + No unsent completed units remaining.
[16:29:55] - Autosend completed
[16:38:31] Completed 105000 out of 250000 steps (42%)
[16:47:05] Completed 107500 out of 250000 steps (43%)
[16:55:40] Completed 110000 out of 250000 steps (44%)
[17:04:17] Completed 112500 out of 250000 steps (45%)
[17:12:52] Completed 115000 out of 250000 steps (46%)
[17:21:28] Completed 117500 out of 250000 steps (47%)
[17:30:04] Completed 120000 out of 250000 steps (48%)
[17:38:43] Completed 122500 out of 250000 steps (49%)
[17:47:23] Completed 125000 out of 250000 steps (50%)
[17:56:02] Completed 127500 out of 250000 steps (51%)
[18:04:39] Completed 130000 out of 250000 steps (52%)
[18:08:30]
[18:08:30] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[18:08:34] CoreStatus = 66 (102)
[18:08:34] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[18:08:35] Killing all core threads
Folding@Home Client Shutdown.