Code: Select all
[21:30:35] - Preparing to get new work unit...
[21:30:35] + Attempting to get work packet
[21:30:35] - Connecting to assignment server
[21:30:35] - Successful: assigned to (171.67.108.24).
[21:30:35] + News From Folding@Home: Welcome to Folding@Home
[21:30:35] Loaded queue successfully.
[21:30:54] + Closed connections
[21:30:54]
[21:30:54] + Processing work unit
[21:30:54] Core required: FahCore_a2.exe
[21:30:54] Core found.
[21:30:54] Working on queue slot 06 [February 4 21:30:54 UTC]
[21:30:54] + Working ...
[21:30:54]
[21:30:54] *------------------------------*
[21:30:54] Folding@Home Gromacs SMP Core
[21:30:54] Version 2.01 (Wed Aug 13 13:11:25 PDT 2008)
[21:30:54]
[21:30:54] Preparing to commence simulation
[21:30:54] - Ensuring status. Please wait.
[21:30:55] Called DecompressByteArray: compressed_data_size=4845905 data_size=24004849, decompressed_data_size=24004849 diff=0
[21:30:55] - Digital signature verified
[21:30:55]
[21:30:55] Project: 2674 (Run 2, Clone 46, Gen 68)
[21:30:55]
[21:30:55] Assembly optimizations on if available.
[21:30:55] Entering M.D.
[21:31:04] (Run 2, Clone 46, Gen 68)
[21:31:04]
[21:31:05] Entering M.D.
NNODES=4, MYRANK=3, HOSTNAME=computenode
NNODES=4, MYRANK=0, HOSTNAME=computenode
NNODES=4, MYRANK=1, HOSTNAME=computenode
NNODES=4, MYRANK=2, HOSTNAME=computenode
NODEID=0 argc=19
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 3.3.99_development_200800503 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_06.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=1 argc=19
NODEID=2 argc=19
NODEID=3 argc=19
Note: tpx file_version 48, software version 56
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
250001 steps, 500.0 ps.
[21:41:24]
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 1
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 1
[21:41:28] CoreStatus = 1 (1)
[21:41:28] Sending work to server
[21:41:28] Project: 2674 (Run 2, Clone 46, Gen 68)
[21:41:28] - Error: Could not get length of results file work/wuresults_06.dat
[21:41:28] - Error: Could not read unit 06 file. Removing from queue.
[21:41:28] - Preparing to get new work unit...
[21:41:28] + Attempting to get work packet
[21:41:28] - Connecting to assignment server
[21:41:29] - Successful: assigned to (171.64.65.56).
[21:41:29] + News From Folding@Home: Welcome to Folding@Home
[21:41:29] Loaded queue successfully.
[21:41:48] + Closed connections
[21:41:53]
[21:41:53] + Processing work unit
[21:41:53] Core required: FahCore_a2.exe
[21:41:53] Core found.
[21:41:53] Working on queue slot 07 [February 4 21:41:53 UTC]
[21:41:53] + Working ...
[21:41:53]
[21:41:53] *------------------------------*
[21:41:53] Folding@Home Gromacs SMP Core
[21:41:53] Version 2.01 (Wed Aug 13 13:11:25 PDT 2008)
[21:41:53]
[21:41:53] Preparing to commence simulation
[21:41:53] - Ensuring status. Please wait.
[21:42:02] - Looking at optimizations...
[21:42:02] - Working with standard loops on this execution.
[21:42:02] - Files status OK
[21:42:03] - Expanded 4841533 -> 23993021 (decompressed 495.5 percent)
[21:42:03] Called DecompressByteArray: compressed_data_size=4841533 data_size=23993021, decompressed_data_size=23993021 diff=0
[21:42:03] - Digital signature verified
[21:42:03]
[21:42:03] Project: 2669 (Run 0, Clone 137, Gen 67)
[21:42:03]
[21:42:04] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=computenode
NNODES=4, MYRANK=1, HOSTNAME=computenode
NNODES=4, MYRANK=2, HOSTNAME=computenode
NNODES=4, MYRANK=3, HOSTNAME=computenode
NODEID=0 argc=19
NODEID=1 argc=19
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 3.3.99_development_200800503 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_07.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=2 argc=19
NODEID=3 argc=19
Note: tpx file_version 48, software version 56
Making 1D domain decomposition 1 x 1 x 4
starting mdrun 'IBX in water'
250000 steps, 500.0 ps.
[21:50:51] Completed 2509 out of 250000 steps (1%)
Writing checkpoint, step 16754350 at Wed Feb 4 16:57:11 2009
[21:59:27] Completed 5009 out of 250000 steps (2%)
[22:08:05] Completed 7509 out of 250000 steps (3%)
Writing checkpoint, step 16758700 at Wed Feb 4 17:12:12 2009
[22:16:44] Completed 10009 out of 250000 steps (4%)
[22:25:23] Completed 12509 out of 250000 steps (5%)
Writing checkpoint, step 16763030 at Wed Feb 4 17:27:11 2009
[22:34:02] Completed 15009 out of 250000 steps (6%)
Writing checkpoint, step 16767370 at Wed Feb 4 17:42:12 2009
[22:42:41] Completed 17509 out of 250000 steps (7%)
[22:43:47]
[22:43:47] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_1]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 1
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[22:43:51] CoreStatus = 66 (102)
[22:43:51] + Shutdown requested by user. Exiting.
Folding@Home Client Shutdown.