Could it be bad ? Or do I just have to ride it out ?
Code: Select all
[10:45:51] Project: 2674 (Run 1, Clone 108, Gen 50)
[10:45:51]
[10:45:51] Assembly optimizations on if available.
[10:45:51] Entering M.D.
[10:46:01] Run 1, Clone 108, Gen 50)
[10:46:01]
[10:46:01] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=3, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=0, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=1, HOSTNAME=localhost.localdomain
NODEID=2 argc=19
NODEID=3 argc=19
NODEID=0 argc=19
NODEID=1 argc=19
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 3.3.99_development_200800503 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_01.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 56
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
2499999 steps, 5000.0 ps.
Writing checkpoint, step 10253630 at Tue Jan 20 03:01:10 2009
Writing checkpoint, step 10257250 at Tue Jan 20 03:16:09 2009
Writing checkpoint, step 10260880 at Tue Jan 20 03:31:09 2009
Writing checkpoint, step 10264630 at Tue Jan 20 03:46:08 2009
Writing checkpoint, step 10268250 at Tue Jan 20 04:01:08 2009
Writing checkpoint, step 10271870 at Tue Jan 20 04:16:10 2009
[12:29:09] Completed 25009 out of 2499999 steps (1%)
Writing checkpoint, step 10275490 at Tue Jan 20 04:31:09 2009
Writing checkpoint, step 10279110 at Tue Jan 20 04:46:09 2009
Writing checkpoint, step 10282740 at Tue Jan 20 05:01:09 2009
Writing checkpoint, step 10286360 at Tue Jan 20 05:16:09 2009
Writing checkpoint, step 10289990 at Tue Jan 20 05:31:09 2009
Writing checkpoint, step 10293610 at Tue Jan 20 05:46:08 2009
Writing checkpoint, step 10297240 at Tue Jan 20 06:01:10 2009
[14:12:37] Completed 50009 out of 2499999 steps (2%)
Writing checkpoint, step 10300860 at Tue Jan 20 06:16:10 2009
Writing checkpoint, step 10304480 at Tue Jan 20 06:31:10 2009
[14:35:05] - Autosending finished units...
[14:35:05] Trying to send all finished work units
[14:35:05] + No unsent completed units remaining.
[14:35:05] - Autosend completed
Writing checkpoint, step 10308090 at Tue Jan 20 06:46:08 2009
Writing checkpoint, step 10311720 at Tue Jan 20 07:01:10 2009
Writing checkpoint, step 10315340 at Tue Jan 20 07:16:08 2009
Writing checkpoint, step 10318970 at Tue Jan 20 07:31:09 2009
Writing checkpoint, step 10322610 at Tue Jan 20 07:46:10 2009
[15:56:07] Completed 75009 out of 2499999 steps (3%)
Writing checkpoint, step 10326220 at Tue Jan 20 08:01:09 2009
Writing checkpoint, step 10329840 at Tue Jan 20 08:16:09 2009
Writing checkpoint, step 10333470 at Tue Jan 20 08:31:09 2009
Writing checkpoint, step 10337100 at Tue Jan 20 08:46:09 2009
Writing checkpoint, step 10340730 at Tue Jan 20 09:01:09 2009
Writing checkpoint, step 10344360 at Tue Jan 20 09:16:09 2009
Writing checkpoint, step 10347990 at Tue Jan 20 09:31:09 2009
[17:39:30] Completed 100009 out of 2499999 steps (4%)
Writing checkpoint, step 10351610 at Tue Jan 20 09:46:08 2009
Writing checkpoint, step 10355240 at Tue Jan 20 10:01:09 2009
Writing checkpoint, step 10358870 at Tue Jan 20 10:16:09 2009
Writing checkpoint, step 10362500 at Tue Jan 20 10:31:10 2009
Writing checkpoint, step 10366120 at Tue Jan 20 10:46:09 2009
Writing checkpoint, step 10369730 at Tue Jan 20 11:01:08 2009
Writing checkpoint, step 10373360 at Tue Jan 20 11:16:10 2009
[19:23:00] Completed 125009 out of 2499999 steps (5%)
Writing checkpoint, step 10376980 at Tue Jan 20 11:31:09 2009
Writing checkpoint, step 10380610 at Tue Jan 20 11:46:09 2009
Writing checkpoint, step 10384240 at Tue Jan 20 12:01:10 2009
Writing checkpoint, step 10387860 at Tue Jan 20 12:16:09 2009
Writing checkpoint, step 10391490 at Tue Jan 20 12:31:10 2009
[20:35:05] - Autosending finished units...
[20:35:05] Trying to send all finished work units
[20:35:05] + No unsent completed units remaining.
[20:35:05] - Autosend completed
Writing checkpoint, step 10395110 at Tue Jan 20 12:46:08 2009
Writing checkpoint, step 10398740 at Tue Jan 20 13:01:09 2009
[21:06:24] Completed 150009 out of 2499999 steps (6%)
Writing checkpoint, step 10402360 at Tue Jan 20 13:16:10 2009
Writing checkpoint, step 10405980 at Tue Jan 20 13:31:08 2009
Writing checkpoint, step 10409600 at Tue Jan 20 13:46:09 2009
Writing checkpoint, step 10413230 at Tue Jan 20 14:01:09 2009
Writing checkpoint, step 10416850 at Tue Jan 20 14:16:09 2009
Writing checkpoint, step 10420470 at Tue Jan 20 14:31:10 2009
Writing checkpoint, step 10424080 at Tue Jan 20 14:46:10 2009
[22:50:01] Completed 175009 out of 2499999 steps (7%)
Writing checkpoint, step 10427690 at Tue Jan 20 15:01:09 2009
Writing checkpoint, step 10431320 at Tue Jan 20 15:16:10 2009
Writing checkpoint, step 10434940 at Tue Jan 20 15:31:10 2009
Writing checkpoint, step 10438560 at Tue Jan 20 15:46:09 2009
Writing checkpoint, step 10442180 at Tue Jan 20 16:01:10 2009
Writing checkpoint, step 10445800 at Tue Jan 20 16:16:09 2009
Writing checkpoint, step 10449420 at Tue Jan 20 16:31:10 2009
[00:33:36] Completed 200009 out of 2499999 steps (8%)
Writing checkpoint, step 10453030 at Tue Jan 20 16:46:09 2009