Code: Select all
Arguments: -smp -bigadv
[00:56:44] - Ask before connecting: No
[00:56:44] - User name: clo007 (Team 111065)
[00:56:44] - User ID: 6A2B74434561D01D
[00:56:44] - Machine ID: 2
[00:56:44]
[00:56:44] Loaded queue successfully.
[00:56:44] - Preparing to get new work unit...
[00:56:44] Cleaning up work directory
[00:56:44] + Attempting to get work packet
[00:56:44] Passkey found
[00:56:44] - Connecting to assignment server
[00:56:44] - Successful: assigned to (128.143.231.201).
[00:56:44] + News From Folding@Home: Welcome to Folding@Home
[00:56:44] Loaded queue successfully.
[01:01:14] + Closed connections
[01:01:14]
[01:01:14] + Processing work unit
[01:01:14] Core required: FahCore_a5.exe
[01:01:14] Core found.
[01:01:14] Working on queue slot 03 [September 10 01:01:14 UTC]
[01:01:14] + Working ...
[01:01:14]
[01:01:14] *------------------------------*
[01:01:14] Folding@Home Gromacs SMP Core
[01:01:14] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
[01:01:14]
[01:01:14] Preparing to commence simulation
[01:01:14] - Looking at optimizations...
[01:01:14] - Created dyn
[01:01:14] - Files status OK
[01:01:18] - Expanded 30251768 -> 33024540 (decompressed 109.1 percent)
[01:01:18] Called DecompressByteArray: compressed_data_size=30251768 data_size=33024540, decompressed_data_size=33024540 diff=0
[01:01:18] - Digital signature verified
[01:01:18]
[01:01:18] Project: 8104 (Run 0, Clone 18, Gen 193)
[01:01:18]
[01:01:18] Assembly optimizations on if available.
[01:01:18] Entering M.D.
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_03.tpr, VERSION 4.5.5-dev-20120903-d64b9e3 (single precision)
[01:01:25] Mapping NT from 24 to 24
Starting 24 threads
Making 2D domain decomposition 6 x 4 x 1
starting mdrun 'FP_membrane in water'
48500000 steps, 194000.0 ps (continuing from step 48250000, 193000.0 ps).
[01:01:28] Completed 0 out of 250000 steps (0%)
[01:17:57] Completed 2500 out of 250000 steps (1%)
[01:34:41] Completed 5000 out of 250000 steps (2%)
NOTE: Turning on dynamic load balancing
[01:51:26] Completed 7500 out of 250000 steps (3%)
[02:08:05] Completed 10000 out of 250000 steps (4%)
[02:24:50] Completed 12500 out of 250000 steps (5%)
[02:41:25] Completed 15000 out of 250000 steps (6%)
[02:58:10] Completed 17500 out of 250000 steps (7%)
[03:14:33] Completed 20000 out of 250000 steps (8%)
[03:30:45] Completed 22500 out of 250000 steps (9%)
[03:47:03] Completed 25000 out of 250000 steps (10%)
[04:03:31] Completed 27500 out of 250000 steps (11%)
[04:20:03] Completed 30000 out of 250000 steps (12%)
[04:36:44] Completed 32500 out of 250000 steps (13%)
[04:53:25] Completed 35000 out of 250000 steps (14%)
[05:09:54] Completed 37500 out of 250000 steps (15%)
[05:26:22] Completed 40000 out of 250000 steps (16%)
[05:43:03] Completed 42500 out of 250000 steps (17%)
[05:59:28] Completed 45000 out of 250000 steps (18%)
[06:16:07] Completed 47500 out of 250000 steps (19%)
[06:32:28] Completed 50000 out of 250000 steps (20%)
[06:48:50] Completed 52500 out of 250000 steps (21%)
[07:05:15] Completed 55000 out of 250000 steps (22%)
[07:21:39] Completed 57500 out of 250000 steps (23%)
[07:38:02] Completed 60000 out of 250000 steps (24%)
[07:54:42] Completed 62500 out of 250000 steps (25%)
[08:10:53] Completed 65000 out of 250000 steps (26%)
[08:27:12] Completed 67500 out of 250000 steps (27%)
[08:43:57] Completed 70000 out of 250000 steps (28%)
[09:00:40] Completed 72500 out of 250000 steps (29%)
[09:17:27] Completed 75000 out of 250000 steps (30%)
[09:33:55] Completed 77500 out of 250000 steps (31%)
[09:50:11] Completed 80000 out of 250000 steps (32%)
[10:06:54] Completed 82500 out of 250000 steps (33%)
[10:23:31] Completed 85000 out of 250000 steps (34%)
[10:39:54] Completed 87500 out of 250000 steps (35%)
[10:56:15] Completed 90000 out of 250000 steps (36%)
[11:12:58] Completed 92500 out of 250000 steps (37%)
[11:29:33] Completed 95000 out of 250000 steps (38%)
[11:46:13] Completed 97500 out of 250000 steps (39%)
[12:02:57] Completed 100000 out of 250000 steps (40%)
[12:19:38] Completed 102500 out of 250000 steps (41%)
[12:36:02] Completed 105000 out of 250000 steps (42%)
[12:52:35] Completed 107500 out of 250000 steps (43%)
[13:09:01] Completed 110000 out of 250000 steps (44%)
[13:25:40] Completed 112500 out of 250000 steps (45%)
[13:42:34] Completed 115000 out of 250000 steps (46%)
[13:59:08] Completed 117500 out of 250000 steps (47%)
[14:15:49] Completed 120000 out of 250000 steps (48%)
[14:32:43] Completed 122500 out of 250000 steps (49%)
[14:49:23] Completed 125000 out of 250000 steps (50%)
[15:05:59] Completed 127500 out of 250000 steps (51%)
[15:22:24] Completed 130000 out of 250000 steps (52%)
[15:38:40] Completed 132500 out of 250000 steps (53%)
[15:54:56] Completed 135000 out of 250000 steps (54%)
[16:11:13] Completed 137500 out of 250000 steps (55%)
[16:28:06] Completed 140000 out of 250000 steps (56%)
[16:44:56] Completed 142500 out of 250000 steps (57%)
[17:01:39] Completed 145000 out of 250000 steps (58%)
[17:18:15] Completed 147500 out of 250000 steps (59%)
[17:34:57] Completed 150000 out of 250000 steps (60%)
[17:51:22] Completed 152500 out of 250000 steps (61%)
[18:07:54] Completed 155000 out of 250000 steps (62%)
[18:24:19] Completed 157500 out of 250000 steps (63%)
[18:40:51] Completed 160000 out of 250000 steps (64%)
[18:57:23] Completed 162500 out of 250000 steps (65%)
[19:13:57] Completed 165000 out of 250000 steps (66%)
[19:30:27] Completed 167500 out of 250000 steps (67%)
[19:46:59] Completed 170000 out of 250000 steps (68%)
[20:03:30] Completed 172500 out of 250000 steps (69%)
[20:19:53] Completed 175000 out of 250000 steps (70%)
[20:36:11] Completed 177500 out of 250000 steps (71%)
[20:52:42] Completed 180000 out of 250000 steps (72%)
[21:09:18] Completed 182500 out of 250000 steps (73%)
[21:26:03] Completed 185000 out of 250000 steps (74%)
[21:42:44] Completed 187500 out of 250000 steps (75%)
[21:59:23] Completed 190000 out of 250000 steps (76%)
[22:16:07] Completed 192500 out of 250000 steps (77%)
[22:32:38] Completed 195000 out of 250000 steps (78%)
[22:49:10] Completed 197500 out of 250000 steps (79%)
[23:05:46] Completed 200000 out of 250000 steps (80%)
[23:21:57] Completed 202500 out of 250000 steps (81%)
[23:38:14] Completed 205000 out of 250000 steps (82%)
[23:54:33] Completed 207500 out of 250000 steps (83%)
[00:10:59] Completed 210000 out of 250000 steps (84%)
[00:27:27] Completed 212500 out of 250000 steps (85%)
[00:44:08] Completed 215000 out of 250000 steps (86%)
[01:00:49] Completed 217500 out of 250000 steps (87%)
[01:17:38] Completed 220000 out of 250000 steps (88%)
[01:34:21] Completed 222500 out of 250000 steps (89%)
[01:51:07] Completed 225000 out of 250000 steps (90%)
[02:07:47] Completed 227500 out of 250000 steps (91%)
[02:24:24] Completed 230000 out of 250000 steps (92%)
[02:40:51] Completed 232500 out of 250000 steps (93%)
[02:57:36] Completed 235000 out of 250000 steps (94%)
[03:14:21] Completed 237500 out of 250000 steps (95%)
[03:31:00] Completed 240000 out of 250000 steps (96%)
[03:47:34] Completed 242500 out of 250000 steps (97%)
[04:04:04] Completed 245000 out of 250000 steps (98%)
[04:20:41] Completed 247500 out of 250000 steps (99%)
[04:37:21] Completed 250000 out of 250000 steps (100%)
Writing final coordinates.
Average load imbalance: 1.8 %
Part of the total run time spent waiting due to load imbalance: 0.6 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % Y 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 99364.008 99364.008 100.0
1d03h36:04
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 1087.608 57.492 0.870 27.601
Thanx for Using GROMACS - Have a Nice Day
[04:37:31] DynamicWrapper: Finished Work Unit: sleep=10000
[04:37:41]
[04:37:41] Finished Work Unit:
[04:37:41] - Reading up to 64206000 from "work/wudata_03.trr": Read 64206000
[04:37:42] trr file hash check passed.
[04:37:42] - Reading up to 31548900 from "work/wudata_03.xtc": Read 31548900
[04:37:42] xtc file hash check passed.
[04:37:42] edr file hash check passed.
[04:37:42] logfile size: 197085
[04:37:42] Leaving Run
[04:37:44] - Writing 96112861 bytes of core data to disk...
[04:38:09] Done: 96112349 -> 91391364 (compressed to 5.7 percent)
[04:38:09] ... Done.
[04:38:09] - Shutting down core
[04:38:09]
[04:38:09] Folding@home Core Shutdown: FINISHED_UNIT
[04:38:09] CoreStatus = 64 (100)
[04:38:09] Sending work to server
[04:38:09] Project: 8104 (Run 0, Clone 18, Gen 193)
[04:38:09] + Attempting to send results [September 11 04:38:09 UTC]
[04:41:12] + Results successfully sent
[04:41:12] Thank you for your contribution to Folding@Home.
[04:41:12] + Number of Units Completed: 2
[04:41:12] - Preparing to get new work unit...
[04:41:12] Cleaning up work directory
[04:41:12] + Attempting to get work packet
[04:41:12] Passkey found
[04:41:12] - Connecting to assignment server
[04:41:13] - Successful: assigned to (128.143.231.201).
[04:41:13] + News From Folding@Home: Welcome to Folding@Home
[04:41:13] Loaded queue successfully.
[04:42:05] + Closed connections
[04:42:05]
[04:42:05] + Processing work unit
[04:42:05] Core required: FahCore_a5.exe
[04:42:05] Core found.
[04:42:05] Working on queue slot 04 [September 11 04:42:05 UTC]
[04:42:05] + Working ...
[04:42:05]
[04:42:05] *------------------------------*
[04:42:05] Folding@Home Gromacs SMP Core
[04:42:05] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
[04:42:05]
[04:42:05] Preparing to commence simulation
[04:42:05] - Looking at optimizations...
[04:42:05] - Created dyn
[04:42:05] - Files status OK
[04:42:09] - Expanded 30334776 -> 33163648 (decompressed 109.3 percent)
[04:42:09] Called DecompressByteArray: compressed_data_size=30334776 data_size=33163648, decompressed_data_size=33163648 diff=0
[04:42:09] - Digital signature verified
[04:42:09]
[04:42:09] Project: 8103 (Run 1, Clone 41, Gen 165)
[04:42:09]
[04:42:09] Assembly optimizations on if available.
[04:42:09] Entering M.D.
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_04.tpr, VERSION 4.5.5-dev-20120903-d64b9e3 (single precision)
[04:42:16] Mapping NT from 24 to 24
Starting 24 threads
Making 2D domain decomposition 6 x 4 x 1
starting mdrun 'FP_membrane in water'
41500000 steps, 166000.0 ps (continuing from step 41250000, 165000.0 ps).
[04:42:19] Completed 0 out of 250000 steps (0%)
[05:02:27] Completed 2500 out of 250000 steps (1%)
[05:23:02] Completed 5000 out of 250000 steps (2%)
[05:43:37] Completed 7500 out of 250000 steps (3%)
[06:04:13] Completed 10000 out of 250000 steps (4%)
[06:24:50] Completed 12500 out of 250000 steps (5%)
[06:45:21] Completed 15000 out of 250000 steps (6%)
[07:06:04] Completed 17500 out of 250000 steps (7%)
[07:26:32] Completed 20000 out of 250000 steps (8%)
[07:47:20] Completed 22500 out of 250000 steps (9%)
[08:08:06] Completed 25000 out of 250000 steps (10%)
[08:28:39] Completed 27500 out of 250000 steps (11%)
[08:49:11] Completed 30000 out of 250000 steps (12%)
[09:09:38] Completed 32500 out of 250000 steps (13%)
[09:30:10] Completed 35000 out of 250000 steps (14%)
[09:50:46] Completed 37500 out of 250000 steps (15%)
[10:11:16] Completed 40000 out of 250000 steps (16%)
[10:31:57] Completed 42500 out of 250000 steps (17%)
[10:52:35] Completed 45000 out of 250000 steps (18%)
[11:13:02] Completed 47500 out of 250000 steps (19%)
[11:33:41] Completed 50000 out of 250000 steps (20%)
[11:54:30] Completed 52500 out of 250000 steps (21%)
[12:15:20] Completed 55000 out of 250000 steps (22%)
[12:36:00] Completed 57500 out of 250000 steps (23%)
[12:56:39] Completed 60000 out of 250000 steps (24%)
[13:17:01] Completed 62500 out of 250000 steps (25%)
[13:37:26] Completed 65000 out of 250000 steps (26%)
[13:57:55] Completed 67500 out of 250000 steps (27%)
[14:18:40] Completed 70000 out of 250000 steps (28%)
[14:39:34] Completed 72500 out of 250000 steps (29%)
[15:00:38] Completed 75000 out of 250000 steps (30%)
[15:21:05] Completed 77500 out of 250000 steps (31%)
[15:41:25] Completed 80000 out of 250000 steps (32%)
[16:01:37] Completed 82500 out of 250000 steps (33%)
[16:22:06] Completed 85000 out of 250000 steps (34%)
[16:42:49] Completed 87500 out of 250000 steps (35%)
[17:03:36] Completed 90000 out of 250000 steps (36%)
[17:24:22] Completed 92500 out of 250000 steps (37%)
[17:44:48] Completed 95000 out of 250000 steps (38%)
[18:05:16] Completed 97500 out of 250000 steps (39%)
[18:25:57] Completed 100000 out of 250000 steps (40%)
[18:47:08] Completed 102500 out of 250000 steps (41%)
[19:08:06] Completed 105000 out of 250000 steps (42%)
[19:29:06] Completed 107500 out of 250000 steps (43%)
[19:49:59] Completed 110000 out of 250000 steps (44%)
[20:10:43] Completed 112500 out of 250000 steps (45%)
[20:31:08] Completed 115000 out of 250000 steps (46%)
[20:52:06] Completed 117500 out of 250000 steps (47%)
[21:12:47] Completed 120000 out of 250000 steps (48%)
[21:33:15] Completed 122500 out of 250000 steps (49%)
[21:54:08] Completed 125000 out of 250000 steps (50%)
[22:14:38] Completed 127500 out of 250000 steps (51%)
[22:35:23] Completed 130000 out of 250000 steps (52%)
[22:56:24] Completed 132500 out of 250000 steps (53%)
[23:16:50] Completed 135000 out of 250000 steps (54%)
[23:37:35] Completed 137500 out of 250000 steps (55%)
[23:58:11] Completed 140000 out of 250000 steps (56%)
[00:18:46] Completed 142500 out of 250000 steps (57%)
[00:39:55] Completed 145000 out of 250000 steps (58%)
[01:01:17] Completed 147500 out of 250000 steps (59%)
[01:22:16] Completed 150000 out of 250000 steps (60%)
[01:43:07] Completed 152500 out of 250000 steps (61%)
[02:04:48] Completed 155000 out of 250000 steps (62%)
[02:26:20] Completed 157500 out of 250000 steps (63%)
[02:47:57] Completed 160000 out of 250000 steps (64%)
[03:09:12] Completed 162500 out of 250000 steps (65%)
[03:30:22] Completed 165000 out of 250000 steps (66%)
[03:51:25] Completed 167500 out of 250000 steps (67%)
[04:11:58] Completed 170000 out of 250000 steps (68%)
[04:32:36] Completed 172500 out of 250000 steps (69%)
[04:53:01] Completed 175000 out of 250000 steps (70%)
[05:13:47] Completed 177500 out of 250000 steps (71%)
[05:34:21] Completed 180000 out of 250000 steps (72%)
[05:55:14] Completed 182500 out of 250000 steps (73%)
[06:15:59] Completed 185000 out of 250000 steps (74%)
[06:37:01] Completed 187500 out of 250000 steps (75%)
[06:58:07] Completed 190000 out of 250000 steps (76%)
[07:18:51] Completed 192500 out of 250000 steps (77%)
[07:39:03] Completed 195000 out of 250000 steps (78%)
[07:59:35] Completed 197500 out of 250000 steps (79%)
[08:20:17] Completed 200000 out of 250000 steps (80%)
[08:40:54] Completed 202500 out of 250000 steps (81%)
[09:01:29] Completed 205000 out of 250000 steps (82%)
[09:22:10] Completed 207500 out of 250000 steps (83%)
[09:43:06] Completed 210000 out of 250000 steps (84%)
[10:04:00] Completed 212500 out of 250000 steps (85%)
[10:25:06] Completed 215000 out of 250000 steps (86%)
[10:45:55] Completed 217500 out of 250000 steps (87%)
[11:06:49] Completed 220000 out of 250000 steps (88%)
[11:27:40] Completed 222500 out of 250000 steps (89%)
[11:48:31] Completed 225000 out of 250000 steps (90%)
[12:09:14] Completed 227500 out of 250000 steps (91%)
[12:29:46] Completed 230000 out of 250000 steps (92%)
[12:49:58] Completed 232500 out of 250000 steps (93%)
[13:10:23] Completed 235000 out of 250000 steps (94%)
[13:31:00] Completed 237500 out of 250000 steps (95%)
[13:51:41] Completed 240000 out of 250000 steps (96%)
[14:12:28] Completed 242500 out of 250000 steps (97%)
[14:33:08] Completed 245000 out of 250000 steps (98%)
[14:53:28] Completed 247500 out of 250000 steps (99%)
[15:13:52] Completed 250000 out of 250000 steps (100%)
Writing final coordinates.
Average load imbalance: 12.8 %
Part of the total run time spent waiting due to load imbalance: 3.6 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 124303.916 124303.916 100.0
1d10h31:43
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 877.284 45.961 0.695 34.529
Thanx for Using GROMACS - Have a Nice Day
[15:14:02] DynamicWrapper: Finished Work Unit: sleep=10000
[15:14:12]
[15:14:12] Finished Work Unit:
[15:14:12] - Reading up to 64407792 from "work/wudata_04.trr": Read 64407792
[15:14:13] trr file hash check passed.
[15:14:13] - Reading up to 31623520 from "work/wudata_04.xtc": Read 31623520
[15:14:13] xtc file hash check passed.
[15:14:13] edr file hash check passed.
[15:14:13] logfile size: 194398
[15:14:13] Leaving Run
[15:14:16] - Writing 96386586 bytes of core data to disk...
[15:14:41] Done: 96386074 -> 91631582 (compressed to 5.9 percent)
[15:14:41] ... Done.
[15:14:41] - Shutting down core
[15:14:41]
[15:14:41] Folding@home Core Shutdown: FINISHED_UNIT
[15:14:41] CoreStatus = 64 (100)
[15:14:41] Sending work to server
[15:14:41] Project: 8103 (Run 1, Clone 41, Gen 165)
[15:14:41] + Attempting to send results [September 12 15:14:41 UTC]
[15:17:44] + Results successfully sent
[15:17:44] Thank you for your contribution to Folding@Home.
[15:17:44] + Number of Units Completed: 3