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# Linux SMP Console Edition ###################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
############################################################################
Launch directory: /fahSMP
Executable: ./fah6
Arguments: -smp -oneunit -verbosity 9
[22:54:36] - Ask before connecting: No
[22:54:36] - User name: xxxxxxxxxxxxx (Team 0)
[22:54:36] - User ID: xxxxxxxxxxxxxx
[22:54:36] - Machine ID: 1
[22:54:36]
[22:54:37] Loaded queue successfully.
[22:54:37] - Autosending finished units... [November 17 22:54:37 UTC]
[22:54:37] - Preparing to get new work unit...
[22:54:37] Trying to send all finished work units
[22:54:37] Cleaning up work directory
[22:54:37] + No unsent completed units remaining.
[22:54:37] - Autosend completed
[22:54:42] + Attempting to get work packet
[22:54:42] Passkey found
[22:54:42] - Will indicate memory of 8001 MB
[22:54:42] - Connecting to assignment server
[22:54:42] Connecting to http://assign.stanford.edu:8080/
[22:54:42] Posted data.
[22:54:42] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[22:54:42] + News From Folding@Home: Welcome to Folding@Home
[22:54:42] Loaded queue successfully.
[22:54:42] Connecting to http://171.64.65.56:8080/
[22:54:43] Posted data.
[22:54:43] Initial: 0000; - Receiving payload (expected size: 763870)
[22:54:44] - Downloaded at ~745 kB/s
[22:54:44] - Averaged speed for that direction ~656 kB/s
[22:54:44] + Received work.
[22:54:44] + Closed connections
[22:54:44]
[22:54:44] + Processing work unit
[22:54:44] Core required: FahCore_a3.exe
[22:54:44] Core found.
[22:54:44] Working on queue slot 04 [November 17 22:54:44 UTC]
[22:54:44] + Working ...
[22:54:44] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 04 -np 6 -checkpoint 15 -verbose -lifeline 2641 -version 629'
[22:54:44]
[22:54:44] *------------------------------*
[22:54:44] Folding@Home Gromacs SMP Core
[22:54:44] Version 2.22 (June 10, 2010)
[22:54:44]
[22:54:44] Preparing to commence simulation
[22:54:44] - Looking at optimizations...
[22:54:44] - Created dyn
[22:54:44] - Files status OK
[22:54:45] - Expanded 763358 -> 1404481 (decompressed 183.9 percent)
[22:54:45] Called DecompressByteArray: compressed_data_size=763358 data_size=1404481, decompressed_data_size=1404481 diff=0
[22:54:45] - Digital signature verified
[22:54:45]
[22:54:45] Project: 6701 (Run 32, Clone 48, Gen 13)
[22:54:45]
[22:54:45] Assembly optimizations on if available.
[22:54:45] Entering M.D.
Starting 6 threads
NNODES=6, MYRANK=4, HOSTNAME=thread #4
NNODES=6, MYRANK=3, HOSTNAME=thread #3
NNODES=6, MYRANK=1, HOSTNAME=thread #1
NNODES=6, MYRANK=2, HOSTNAME=thread #2
NNODES=6, MYRANK=0, HOSTNAME=thread #0
NNODES=6, MYRANK=5, HOSTNAME=thread #5
Reading file work/wudata_04.tpr, VERSION 4.0.99_development_20090605 (single precision)
Making 2D domain decomposition 3 x 2 x 1
starting mdrun 'VSD in POPC and water, neutralized'
28000000 steps, 140000.0 ps (continuing from step 26000000, 130000.0 ps).
NOTE: Turning on dynamic load balancing
[22:54:51] Completed 0 out of 2000000 steps (0%)
[23:03:40] Completed 20000 out of 2000000 steps (1%)
[23:12:34] Completed 40000 out of 2000000 steps (2%)
[23:21:25] Completed 60000 out of 2000000 steps (3%)
[23:30:56] Completed 80000 out of 2000000 steps (4%)
[23:39:47] Completed 100000 out of 2000000 steps (5%)
[23:48:37] Completed 120000 out of 2000000 steps (6%)
[23:57:27] Completed 140000 out of 2000000 steps (7%)
[00:06:17] Completed 160000 out of 2000000 steps (8%)
[00:15:07] Completed 180000 out of 2000000 steps (9%)
[00:23:56] Completed 200000 out of 2000000 steps (10%)
[00:32:46] Completed 220000 out of 2000000 steps (11%)
[00:41:37] Completed 240000 out of 2000000 steps (12%)
[00:50:27] Completed 260000 out of 2000000 steps (13%)
[00:59:17] Completed 280000 out of 2000000 steps (14%)
[01:08:07] Completed 300000 out of 2000000 steps (15%)
[01:16:57] Completed 320000 out of 2000000 steps (16%)
[01:25:48] Completed 340000 out of 2000000 steps (17%)
[01:34:37] Completed 360000 out of 2000000 steps (18%)
[01:43:26] Completed 380000 out of 2000000 steps (19%)
[01:52:15] Completed 400000 out of 2000000 steps (20%)
[02:01:05] Completed 420000 out of 2000000 steps (21%)
[02:09:57] Completed 440000 out of 2000000 steps (22%)
[02:18:48] Completed 460000 out of 2000000 steps (23%)
[02:27:39] Completed 480000 out of 2000000 steps (24%)
[02:36:31] Completed 500000 out of 2000000 steps (25%)
[02:45:23] Completed 520000 out of 2000000 steps (26%)
[02:54:16] Completed 540000 out of 2000000 steps (27%)
[03:03:09] Completed 560000 out of 2000000 steps (28%)
[03:12:02] Completed 580000 out of 2000000 steps (29%)
[03:20:54] Completed 600000 out of 2000000 steps (30%)
[03:29:46] Completed 620000 out of 2000000 steps (31%)
[03:38:36] Completed 640000 out of 2000000 steps (32%)
[03:47:27] Completed 660000 out of 2000000 steps (33%)
[03:56:17] Completed 680000 out of 2000000 steps (34%)
[04:05:07] Completed 700000 out of 2000000 steps (35%)
[04:13:56] Completed 720000 out of 2000000 steps (36%)
[04:22:45] Completed 740000 out of 2000000 steps (37%)
Step 26746317, time 133732 (ps) LINCS WARNING
relative constraint deviation after LINCS:
rms 0.309352, max 15.117760 (between atoms 3694 and 3695)
Step 26746317, time 133732 (ps) LINCS WARNING
relative constraint deviation after LINCS:
rms 41.092666, max 1019.467773 (between atoms 3694 and 3693)
bonds that rotated more than 90 degrees:
atom 1 atom 2 angle previous, current, constraint length
bonds that rotated more than 90 degrees:
atom 1 atom 2 angle previous, current, constraint length
3696 3695 93.5 0.1530 0.4436 0.1530
3694 3695 91.4 0.1470 2.3693 0.1470
3691 3694 91.1 0.1470 2.3189 0.1470
3693 3694 90.0 0.1470 150.0088 0.1470
3692 3694 90.9 0.1470 2.3770 0.1470
3697 3696 104.9 0.1430 0.0379 0.1430
136 152 106.0 0.1522 16.4119 0.1522
3694 3691 91.1 0.1470 2.3189 0.1470
3694 3692 90.9 0.1470 2.3770 0.1470
3694 3693 90.0 0.1470 150.0088 0.1470
3694 3695 91.4 0.1470 2.3693 0.1470
3695 3696 93.5 0.1530 0.4436 0.1530
3696 3697 104.9 0.1430 0.0379 0.1430
138 146 90.9 0.1663 86.6995 0.1662
138 147 90.8 0.1663 86.7540 0.1662
152 154 143.3 0.1335 3.1027 0.1335
[04:25:35] CoreStatus = 0 (0)
[04:25:35] Sending work to server
[04:25:35] Project: 6701 (Run 32, Clone 48, Gen 13)
[04:25:35] - Error: Could not get length of results file work/wuresults_04.dat
[04:25:35] - Error: Could not read unit 04 file. Removing from queue.
[04:25:35] Trying to send all finished work units
[04:25:35] + No unsent completed units remaining.
[04:25:35] + -oneunit flag given and have now finished a unit. Exiting.- Preparing to get new work unit...
[04:25:35] Cleaning up work directory
[04:25:35] ***** Got a SIGTERM signal (15)
[04:25:35] Killing all core threads