Project: 2675 (Run 3, Clone 13, Gen 159)

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^w^ing
Posts: 136
Joined: Fri Mar 07, 2008 7:29 pm
Hardware configuration: C2D E6400 2.13 GHz @ 3.2 GHz
Asus EN8800GTS 640 (G80) @ 660/792/1700 running the 6.23 w/ core11 v1.19
forceware 260.89
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Location: Prague

Project: 2675 (Run 3, Clone 13, Gen 159)

Post by ^w^ing »

Code: Select all

[17:41:42] Completed 247500 out of 250000 steps  (99%)
[17:53:00] Completed 250000 out of 250000 steps  (100%)
[17:53:01] DynamicWrapper: Finished Work Unit: sleep=10000
[17:53:11] 
[17:53:11] Finished Work Unit:
[17:53:11] - Reading up to 21128112 from "work/wudata_09.trr": Read 21128112
[17:53:12] trr file hash check passed.
[17:53:12] - Reading up to 4439376 from "work/wudata_09.xtc": Read 4439376
[17:53:12] xtc file hash check passed.
[17:53:12] edr file hash check passed.
[17:53:12] logfile size: 183328
[17:53:12] Leaving Run
[17:53:15] - Writing 25895912 bytes of core data to disk...
[17:53:16]   ... Done.
[17:53:22] - Shutting down core
[17:53:22] 
[17:53:22] Folding@home Core Shutdown: FINISHED_UNIT
[17:56:37] CoreStatus = 64 (100)
[17:56:37] Unit 9 finished with 71 percent of time to deadline remaining.
[17:56:37] Updated performance fraction: 0.656207
[17:56:37] Sending work to server
[17:56:37] Project: 2669 (Run 1, Clone 76, Gen 146)


[17:56:37] + Attempting to send results [July 12 17:56:37 UTC]
[17:56:37] - Reading file work/wuresults_09.dat from core
[17:56:37]   (Read 25895912 bytes from disk)
[17:56:37] Connecting to http://171.64.65.56:8080/
[18:06:04] Posted data.
[18:06:04] Initial: 0000; - Uploaded at ~44 kB/s
[18:06:11] - Averaged speed for that direction ~44 kB/s
[18:06:11] + Results successfully sent
[18:06:11] Thank you for your contribution to Folding@Home.
[18:06:11] + Number of Units Completed: 139

[18:06:13] - Warning: Could not delete all work unit files (9): Core file absent
[18:06:13] Trying to send all finished work units
[18:06:13] + No unsent completed units remaining.
[18:06:13] - Preparing to get new work unit...
[18:06:13] + Attempting to get work packet
[18:06:13] - Will indicate memory of 752 MB
[18:06:13] - Connecting to assignment server
[18:06:13] Connecting to http://assign.stanford.edu:8080/
[18:06:14] Posted data.
[18:06:14] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[18:06:14] + News From Folding@Home: Welcome to Folding@Home
[18:06:14] Loaded queue successfully.
[18:06:14] Connecting to http://171.64.65.56:8080/
[18:06:21] Posted data.
[18:06:21] Initial: 0000; - Receiving payload (expected size: 4843251)
[18:07:41] - Downloaded at ~59 kB/s
[18:07:41] - Averaged speed for that direction ~88 kB/s
[18:07:41] + Received work.
[18:07:41] Trying to send all finished work units
[18:07:41] + No unsent completed units remaining.
[18:07:41] + Closed connections
[18:07:41] 
[18:07:41] + Processing work unit
[18:07:41] At least 4 processors must be requested.Core required: FahCore_a2.exe
[18:07:41] Core found.
[18:07:41] Working on queue slot 00 [July 12 18:07:41 UTC]
[18:07:41] + Working ...
[18:07:41] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 00 -checkpoint 30 -forceasm -verbose -lifeline 4395 -version 624'

[18:07:41] 
[18:07:41] *------------------------------*
[18:07:41] Folding@Home Gromacs SMP Core
[18:07:41] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[18:07:41] 
[18:07:41] Preparing to commence simulation
[18:07:41] - Ensuring status. Please wait.
[18:07:50] - Assembly optimizations manually forced on.
[18:07:50] - Not checking prior termination.
[18:07:52] - Expanded 4842739 -> 23994061 (decompressed 495.4 percent)
[18:07:52] Called DecompressByteArray: compressed_data_size=4842739 data_size=23994061, decompressed_data_size=23994061 diff=0
[18:07:53] - Digital signature verified
[18:07:53] 
[18:07:53] Project: 2675 (Run 3, Clone 13, Gen 159)
[18:07:53] 
[18:07:53] Assembly optimizations on if available.
[18:07:53] Entering M.D.
[18:08:03] Completed 0 out of 250000 steps  (0%)
[18:08:04] 
[18:08:04] Folding@home Core Shutdown: INTERRUPTED
Bash printed out that two "water molecules cannot be settled", and the same happens upon restart.

edit: eh, after I downloaded a different WU, my client keep crashing with segfaults and I cant seem to get the client to work :<
toTOW
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Re: Project: 2675 (Run 3, Clone 13, Gen 159)

Post by toTOW »

Did a reboot help :?:

Did something broke in your marchine ? :(

It might be the time to run a sanity check on your CPU, RAM and cooling.
Image

Folding@Home beta tester since 2002. Folding Forum moderator since July 2008.
^w^ing
Posts: 136
Joined: Fri Mar 07, 2008 7:29 pm
Hardware configuration: C2D E6400 2.13 GHz @ 3.2 GHz
Asus EN8800GTS 640 (G80) @ 660/792/1700 running the 6.23 w/ core11 v1.19
forceware 260.89
Asus P5N-E SLi
2GB 800MHz DDRII (2xCorsair TwinX 512MB)
WinXP 32 SP3
Location: Prague

Re: Project: 2675 (Run 3, Clone 13, Gen 159)

Post by ^w^ing »

Something is broken all right, the question is what... Cooling shouldnt be a problem, blew loads of dust out of the whole pc last week, cpu and ram went through stresstests fine... I remember seeing the first issue i posted about two "water molecules cannot be settled" in these forums, but never before did i see whats happening to me now. It gives me a Gromacs error.
Last edited by ^w^ing on Sun Jul 12, 2009 11:06 pm, edited 1 time in total.
^w^ing
Posts: 136
Joined: Fri Mar 07, 2008 7:29 pm
Hardware configuration: C2D E6400 2.13 GHz @ 3.2 GHz
Asus EN8800GTS 640 (G80) @ 660/792/1700 running the 6.23 w/ core11 v1.19
forceware 260.89
Asus P5N-E SLi
2GB 800MHz DDRII (2xCorsair TwinX 512MB)
WinXP 32 SP3
Location: Prague

Re: Project: 2675 (Run 3, Clone 13, Gen 159)

Post by ^w^ing »

here is the whole log as seen in terminal.

Code: Select all

--- Opening Log file [July 12 23:04:18 UTC] 


# Linux SMP Console Edition ###################################################
###############################################################################

                       Folding@Home Client Version 6.24beta

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/slls/folding
Executable: ./fah6
Arguments: -smp -forceasm -verbosity 9 -advmethods 

[23:04:18] - Ask before connecting: No
[23:04:18] - User name: ^w^ing (Team 0)
[23:04:18] - User ID: 6DAE38132882F386
[23:04:18] - Machine ID: 2
[23:04:18] 
[23:04:18] Loaded queue successfully.
[23:04:18] - Autosending finished units... [July 12 23:04:18 UTC]
[23:04:18] Trying to send all finished work units
[23:04:18] + No unsent completed units remaining.
[23:04:18] - Autosend completed
[23:04:18] 
[23:04:18] + Processing work unit
[23:04:18] At least 4 processors must be requested.Core required: FahCore_a2.exe
[23:04:18] Core found.
[23:04:18] Working on queue slot 03 [July 12 23:04:18 UTC]
[23:04:18] + Working ...
[23:04:18] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 03 -checkpoint 30 -forceasm -verbose -lifeline 4578 -version 624'

[23:04:18] 
[23:04:18] *------------------------------*
[23:04:18] Folding@Home Gromacs SMP Core
[23:04:18] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[23:04:18] 
[23:04:18] Preparing to commence simulation
[23:04:18] - Ensuring status. Please wait.
[23:04:28] - Assembly optimizations manually forced on.
[23:04:28] - Not checking prior termination.
[23:04:29] - Expanded 3984912 -> 16935197 (decompressed 424.9 percent)
[23:04:29] Called DecompressByteArray: compressed_data_size=3984912 data_size=16935197, decompressed_data_size=16935197 diff=0
[23:04:29] - Digital signature verified
[23:04:29] 
[23:04:29] Project: 2675 (Run 0, Clone 178, Gen 4)
[23:04:29] 
[23:04:29] Assembly optimizations on if available.
[23:04:29] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=ubuntu
NNODES=4, MYRANK=2, HOSTNAME=ubuntu
NNODES=4, MYRANK=1, HOSTNAME=ubuntu
NNODES=4, MYRANK=3, HOSTNAME=ubuntu
NODEID=2 argc=20
NODEID=0 argc=20
NODEID=1 argc=20
NODEID=3 argc=20
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 4.0.99_development_20090307  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

Reading file work/wudata_03.tpr, VERSION 3.3.99_development_20070618 (single precision)

-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: symtab.c, line: 108

Fatal error:
symtab get_symtab_handle 2612 not found
For more information and tips for trouble shooting please check the GROMACS Wiki at
http://wiki.gromacs.org/index.php/Errors
-------------------------------------------------------

Thanx for Using GROMACS - Have a Nice Day

Error on node 0, will try to stop all the nodes
Halting parallel program mdrun on CPU 0 out of 4

gcq#0: Thanx for Using GROMACS - Have a Nice Day

[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
[0]0:Return code = 255
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
whereas this seems to be the most scary part:

Code: Select all

Fatal error:
symtab get_symtab_handle 2612 not found
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