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Project: 2670 (Run 5, Clone 48, Gen 71) seg fault

Posted: Mon May 04, 2009 6:49 pm
by alpha754293
tee capture:

Code: Select all

[09:17:27] 
[09:17:27] *------------------------------*
[09:17:27] Folding@Home Gromacs SMP Core
[09:17:27] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[09:17:27] 
[09:17:27] Preparing to commence simulation
[09:17:27] - Ensuring status. Please wait.
[09:17:28] Called DecompressByteArray: compressed_data_size=4842559 data_size=24033653, decompressed_data_size=24033653 diff=0
[09:17:28] - Digital signature verified
[09:17:28] 
[09:17:28] Project: 2670 (Run 5, Clone 48, Gen 71)
[09:17:28] 
[09:17:29] Assembly optimizations on if available.
[09:17:29] Entering M.D.
[09:17:38] (Run 5, Clone 48, Gen 71)
[09:17:38] 
[09:17:38] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=computenode
NNODES=4, MYRANK=2, HOSTNAME=computenode
NNODES=4, MYRANK=3, HOSTNAME=computenode
NNODES=4, MYRANK=0, HOSTNAME=computenode
NODEID=0 argc=20
NODEID=1 argc=20
NODEID=2 argc=20
NODEID=3 argc=20
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 4.0.99_development_20090307  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

Reading file work/wudata_04.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 64

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22866 system in water'
18000002 steps,  36000.0 ps (continuing from step 17750002,  35500.0 ps).
[09:26:40] pleted 2500 out of 250000 steps  (1%)
[09:35:33] Completed 5000 out of 250000 steps  (2%)
[09:44:27] Completed 7500 out of 250000 steps  (3%)
[09:53:21] Completed 10000 out of 250000 steps  (4%)
[10:02:15] Completed 12500 out of 250000 steps  (5%)
[10:11:08] Completed 15000 out of 250000 steps  (6%)
[10:20:01] Completed 17500 out of 250000 steps  (7%)
[10:28:55] Completed 20000 out of 250000 steps  (8%)
[10:37:51] Completed 22500 out of 250000 steps  (9%)
[10:46:47] Completed 25000 out of 250000 steps  (10%)
[10:55:43] Completed 27500 out of 250000 steps  (11%)
[11:04:41] Completed 30000 out of 250000 steps  (12%)
[11:13:39] Completed 32500 out of 250000 steps  (13%)
[11:22:37] Completed 35000 out of 250000 steps  (14%)
[11:31:36] Completed 37500 out of 250000 steps  (15%)
[11:40:33] Completed 40000 out of 250000 steps  (16%)
[11:49:29] Completed 42500 out of 250000 steps  (17%)
[11:58:26] Completed 45000 out of 250000 steps  (18%)
[12:07:22] Completed 47500 out of 250000 steps  (19%)
[12:16:19] Completed 50000 out of 250000 steps  (20%)
[12:25:15] Completed 52500 out of 250000 steps  (21%)
[12:34:10] Completed 55000 out of 250000 steps  (22%)
[12:41:10] 
[12:41:10] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[12:41:14] CoreStatus = 66 (102)
[12:41:14] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[12:41:14] Killing all core threads

Folding@Home Client Shutdown.
restarting client...

Re: Project: 2670 (Run 5, Clone 48, Gen 71) seg fault

Posted: Tue May 05, 2009 2:52 pm
by toTOW
Hi alpha754293 (team 596),
Your WU (P2670 R5 C48 G71) was added to the stats database on 2009-05-05 00:11:47 for 1920 points of credit.

There's another donor who completed it for full credit (it got the assignement 5 minutes after it was assigned to you).