Project: 2665 (Run 2, Clone 650, Gen 52)
Posted: Thu Oct 02, 2008 2:10 am
Someone please tell me p2665 is going to end soon... and/or the A2 core for Windows is almost here. /sigh
[00:05:33] Gromacs cannot continue further.
at 18%
(Repeat...)
[00:05:33] Gromacs cannot continue further.
at 18%
Code: Select all
[19:32:41] + Processing work unit
[19:32:41] Work type a1 not eligible for variable processors
[19:32:41] Core required: FahCore_a1.exe
[19:32:41] Core found.
[19:32:41] Working on queue slot 04 [October 1 19:32:41 UTC]
[19:32:41] + Working ...
[19:32:41] - Calling 'mpiexec -np 4 -channel shm -env MPICH_USE_SMP_OPTIMIZATIONS 1 -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 04 -checkpoint 16 -verbose -lifeline 4272 -version 622'
[19:32:42]
[19:32:42] *------------------------------*
[19:32:42] Folding@Home Gromacs SMP Core
[19:32:42] Version 1.76 (February 23, 2008)
[19:32:42]
[19:32:42] Preparing to commence simulation
[19:32:42] - Ensuring status. Please wait- Created dyn
[19:32:42] - Files status OK
[19:32:42] this execution.
[19:32:42] - Previous termination of core was improper.
[19:32:42] - Files status OK
[19:32:51] - Expanded 4785395 -> 24810145 (decompressed 518.4 percent)
[19:32:51] - Starting from initial work packet
[19:32:51]
[19:32:51] Project: 2665 (Run 2, Clone 650, Gen 52)
[19:32:51]
[19:32:52] Entering M.D.
[19:33:03] acket
[19:33:03]
[19:33:03] Project: 2665 (Run 2, Clone 650, Gen 52)
[19:33:03]
[19:33:04] Entering M.D.
[19:33:10] Rejecting checkpoint
[19:33:11] Protein: HGG with glycosylations
[19:33:11] Writing local files
[19:33:18] Extra SSE boost OK.
[19:33:19] Writing local files
[19:33:19] Completed 0 out of 250000 steps (0 percent)
[19:47:35] Writing local files
[19:47:35] Completed 2500 out of 250000 steps (1 percent)
[20:01:50] Writing local files
[20:01:50] Completed 5000 out of 250000 steps (2 percent)
[20:16:05] Writing local files
[20:16:06] Completed 7500 out of 250000 steps (3 percent)
[20:30:20] Writing local files
[20:30:21] Completed 10000 out of 250000 steps (4 percent)
[20:44:36] Writing local files
[20:44:36] Completed 12500 out of 250000 steps (5 percent)
[20:58:51] Writing local files
[20:58:52] Completed 15000 out of 250000 steps (6 percent)
[21:13:07] Writing local files
[21:13:07] Completed 17500 out of 250000 steps (7 percent)
[21:27:22] Writing local files
[21:27:22] Completed 20000 out of 250000 steps (8 percent)
[21:41:36] Writing local files
[21:41:36] Completed 22500 out of 250000 steps (9 percent)
[21:55:51] Writing local files
[21:55:52] Completed 25000 out of 250000 steps (10 percent)
[22:10:07] Writing local files
[22:10:07] Completed 27500 out of 250000 steps (11 percent)
[22:24:28] Writing local files
[22:24:28] Completed 30000 out of 250000 steps (12 percent)
[22:39:26] Writing local files
[22:39:26] Completed 32500 out of 250000 steps (13 percent)
[22:54:58] Writing local files
[22:54:59] Completed 35000 out of 250000 steps (14 percent)
[23:10:31] Writing local files
[23:10:31] Completed 37500 out of 250000 steps (15 percent)
[23:25:57] Writing local files
[23:25:58] Completed 40000 out of 250000 steps (16 percent)
[23:41:58] Timered checkpoint triggered.
[23:42:23] Writing local files
[23:42:23] Completed 42500 out of 250000 steps (17 percent)
[23:57:18] Writing local files
[23:57:18] Completed 45000 out of 250000 steps (18 percent)
[00:05:33] Gromacs cannot continue further.
[00:05:33] Going to send back what have done.
[00:05:33] logfile size: 42827
[00:05:33] - Writing 43363 bytes of core data to disk...
[00:05:33] ... Done.
[00:05:33] - Failed to delete work/wudata_04.sas
[00:05:33] - Failed to delete work/wudata_04.goe
[00:05:33] Warning: check for stray files
[00:07:33]
[00:07:33] Folding@home Core Shutdown: EARLY_UNIT_END
[00:07:33]
[00:07:33] Folding@home Core Shutdown: EARLY_UNIT_END
[00:07:38] CoreStatus = 63 (99)
[00:07:38] + Error starting Folding@Home core.
[00:07:43]
[00:07:43] + Processing work unit
[00:07:43] Work type a1 not eligible for variable processors
[00:07:43] Core required: FahCore_a1.exe
[00:07:43] Core found.
[00:07:43] Working on queue slot 04 [October 2 00:07:43 UTC]
[00:07:43] + Working ...
[00:07:43] - Calling 'mpiexec -np 4 -channel shm -env MPICH_USE_SMP_OPTIMIZATIONS 1 -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 04 -checkpoint 16 -verbose -lifeline 4272 -version 622'
[00:07:44]
[00:07:44] *------------------------------*
[00:07:44] Folding@Home Gromacs SMP Core
[00:07:44] Version 1.76 (February 23, 2008)
[00:07:44]
[00:07:44] Preparing to commence simulation
[00:07:44] - Ensuring status. Please wait.
[00:08:01] - Looking at optimizations...
[00:08:01] - Working with standard loops on this execution.
[00:08:01] - Previous termination of core was improper.
[00:08:01] - Files status OK
[00:09:44] ut
[00:10:01] lding@home Core Shutdown: MISSING_WORK_FILES
[00:10:01] Finalizing output
[00:10:04] CoreStatus = 1 (1)
[00:10:04] Client-core communications error: ERROR 0x1
[00:10:04] Deleting current work unit & continuing...
[00:12:24] - Warning: Could not delete all work unit files (4): Core returned invalid code
[00:12:24] Trying to send all finished work units
[00:12:24] + No unsent completed units remaining.
[00:12:24] - Preparing to get new work unit...
[00:12:24] + Attempting to get work packet
[00:12:24] - Will indicate memory of 2046 MB
[00:12:24] - Connecting to assignment server