Folding Forum • ProtoMol Core, FAH6.02 on freeBSD getting no ponts

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ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Fri Apr 09, 2010 10:01 am

by IronTom

I'm running FAH6.02-Linux client on freeBSD. Every thing was working until last weekend.
I thought it was just the servers being down but now looks like it is related to the ProtoMol Core.

Machine specs:

FreeBSD 8.0-RELEASE-p2 #0: Fri Feb 12 10:24:42 UTC 2010
root@SuperMicro1:/usr/obj/usr/src/sys/SUPERMICRO1
Timecounter "i8254" frequency 1193182 Hz quality 0
CPU: Quad-Core AMD Opteron(tm) Processor 2382 (2613.41-MHz K8-class CPU)
Origin = "AuthenticAMD" Id = 0x100f42 Stepping = 2
Features=0x178bfbff<FPU,VME,DE,PSE,TSC,MSR,PAE,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,PSE36,CLFLUSH,MMX,FXSR,SSE,SSE2,HTT>
Features2=0x802009<SSE3,MON,CX16,POPCNT>
AMD Features=0xee500800<SYSCALL,NX,MMX+,FFXSR,Page1GB,RDTSCP,LM,3DNow!+,3DNow!>
AMD Features2=0x37ff<LAHF,CMP,SVM,ExtAPIC,CR8,ABM,SSE4A,MAS,Prefetch,OSVW,IBS,SKINIT,WDT>
TSC: P-state invariant
real memory = 34896609280 (33280 MB)
avail memory = 33163210752 (31626 MB)
ACPI APIC Table: <S M C OEMAPIC >
FreeBSD/SMP: Multiprocessor System Detected: 8 CPUs
FreeBSD/SMP: 2 package(s) x 4 core(s)

I'm running as classical client with 8 instances.

Code: Select all

Launch directory: /home/folder/folding_5
Executable: /home/folder/foldingathome/fah6
Arguments: -forceasm -freeBSD 
[07:31:50] - Ask before connecting: No
[07:31:50] - User name: irontom (Team 11734)
[07:31:50] - User ID: F14C3685...
[07:31:50] - Machine ID: 6
[07:31:50] 
[07:31:50] Loaded queue successfully.
[07:31:50] 
[07:31:50] + Processing work unit
[07:31:50] Core required: FahCore_78.exe
[07:31:50] - Read packet limit of 540015616... [07:31:50] Core found.
Set to 524286976.
[07:31:50] Working on Unit 04 [April 3 07:31:50]
[07:31:50] + Working ...
[07:31:50] 
[07:31:50] *------------------------------*
[07:31:50] Folding@Home Gromacs Core

[15:07:07] + Attempting to send results
[15:07:07] - Couldn't send HTTP request to server
[15:07:07] + Could not connect to Work Server (results)
[15:07:07]     (171.65.103.162:8080)
[15:07:07] - Error: Could not transmit unit 04 (completed April 5) to work server.
[15:07:07]   Keeping unit 04 in queue.

[15:08:58] Working on Unit 05 [April 5 15:08:58]
[15:08:58] + Working ...
[15:08:58] 
[15:08:58] *------------------------------*
[15:08:58] Folding@Home Gromacs Core
[15:08:58] Version 1.90 (March 8, 2006)
[15:08:58] 
[15:08:58] Preparing to commence simulation
[15:08:58] - Assembly optimizations manually forced on.
[15:08:58] - Not checking prior termination.
[15:09:03] - Expanded 3005850 -> 15153325 (decompressed 504.1 percent)
[15:09:03] - Starting from initial work packet
[15:09:03] 
[15:09:03] Project: 2485 (Run 135, Clone 10, Gen 15)

[23:29:36] CoreStatus = 64 (100)
[23:29:36] Sending work to server
[23:29:36] - Read packet limit of 540015616... Set to 524286976.


[23:29:36] + Attempting to send results
[23:29:44] + Results successfully sent
[23:29:44] Thank you for your contribution to Folding@Home.
[23:29:44] + Number of Units Completed: 15

[23:29:44] - Preparing to get new work unit...
[23:29:44] + Attempting to get work packet
[23:29:44] - Connecting to assignment server
[23:29:45] - Successful: assigned to (129.74.85.15).
[23:29:45] + News From Folding@Home: Welcome to Folding@Home
[23:29:45] Loaded queue successfully.
[23:29:46] + Closed connections
[23:29:46] 
[23:29:46] + Processing work unit
[23:29:46] Core required: FahCore_b4.exe
[23:29:46] Core not found.
[23:29:46] - Core is not present or corrupted.
[23:29:46] - Attempting to download new core...
[23:29:46] + Downloading new core: FahCore_b4.exe

[23:31:27] Core required: FahCore_b4.exe
[23:31:27] Core found.
[23:31:27] Working on Unit 06 [April 7 23:31:27]
[23:31:27] + Working ...
[23:31:28] *********************** Log Started 07/Apr/2010 23:31:27 ************
***********
[23:31:28] ************************** ProtoMol Folding@Home Core ***************
***********
[23:31:28]   Version: 23
[23:31:28]      Type: 180
[23:31:28]      Core: ProtoMol
[23:31:28]   Website: http://folding.stanford.edu/
[23:31:28] Copyright: (c) 2009 Stanford University
[23:31:28]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[23:31:28]      Args: -dir work/ -suffix 06 -priority 96 -checkpoint 30 -forceasm -lifeline
[23:31:28]            11749 -version 602
[23:31:28] ************************************ Build *************************************
[23:31:28]      Date: Mar 21 2010
[23:31:28]      Time: 10:27:10
[23:31:28]  Revision: 1789
[23:31:28]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[23:31:28]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[23:31:28]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[23:31:28]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[23:31:28]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[23:31:28]  Platform: Linux 2.4.27-3-386
[23:31:28]      Bits: 32
[23:31:28]      Mode: Release
[23:31:28] ************************************ System ************************************
[23:31:28]        OS: Linux 2.6.16 i686
[23:31:28]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[23:31:28]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[23:31:28]      CPUs: 1 Logical, 1 Physical
[23:31:28]    Memory: 3.99 GB
[23:31:28]   Threads: Linux
[23:31:28] ********************************************************************************
[23:31:28] Project: 10012 (Run 3180, Clone 0, Gen 0)
[23:31:28] Reading tar file ww.psf
[23:31:28] Reading tar file protomol.conf
[23:31:28] Reading tar file core.xml
[23:31:28] Digital signatures verified
[23:31:28] ERROR: fah/os/Thread.cpp:169:starter: Exception: In thread 12: @ fah/net/Socket.cpp:128:bind 0: Could not bind socket to 127.0.0.1:52753: Address already in use
[23:31:28] Completed 0 out of 499375 steps (0%)
[23:35:46] Completed 5000 out of 499375 steps (1%)

[13:00:57] Completed 499300 out of 499375 steps (99%)
[13:01:07] Saving result file logfile_06.txt
[13:01:07] Saving result file checkpt
[13:01:07] Saving result file checkpt.crc
[13:01:07] Saving result file log.txt
[13:01:13] Saving result file protomol.conf
[13:01:13] Saving result file ww.26.pos
[13:01:13] Saving result file ww.26.vel
[13:01:13] Saving result file ww.dcd
[13:01:14] Folding@home Core Shutdown: FINISHED_UNIT
[13:01:14] CoreStatus = 64 (100)
[13:01:14] Sending work to server
[13:01:14] - Read packet limit of 540015616... Set to 524286976.


[13:01:14] + Attempting to send results
[15:11:27] - Couldn't send HTTP request to server
[15:11:27] + Could not connect to Work Server (results)
[15:11:27]     (129.74.85.15:8080)
[15:11:27] - Error: Could not transmit unit 06 (completed April 8) to work server.
[15:11:27]   Keeping unit 06 in queue.

[15:11:27] + Attempting to send results
[15:12:21] + Results successfully sent
[15:12:21] Thank you for your contribution to Folding@Home.
[15:12:21] + Number of Units Completed: 16

That looks like it is working except for the error tiring to run threads.
But I don't see any points added to my score?
This next one looks like it may have some problem?

Code: Select all

--- Opening Log file [April 3 07:31:50] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_7
Executable: /home/folder/foldingathome/fah6
Arguments: -forceasm -freeBSD 

[07:31:50] - Ask before connecting: No
[07:31:50] - User name: ironTom (Team 11743)
[07:31:50] - User ID: 7D5389E...
[07:31:50] - Machine ID: 8

[18:50:59] - Shutting down core
[18:50:59] 
[18:50:59] Folding@home Core Shutdown: FINISHED_UNIT
[18:51:05] CoreStatus = 64 (100)
[18:51:05] Sending work to server
[18:51:05] - Preparing to get new work unit...

[18:51:38] Core required: FahCore_78.exe
[18:51:38] Core found.
[18:51:38] Working on Unit 03 [April 5 18:51:38]

[14:16:13] Folding@home Core Shutdown: FINISHED_UNIT
[14:16:14] CoreStatus = 64 (100)
[14:16:14] Sending work to server
[14:16:14] - Preparing to get new work unit...

[16:30:56] + Processing work unit
[16:30:56] Core required: FahCore_b4.exe
[16:30:56] Core not found.
[16:30:56] - Core is not present or corrupted.
[16:30:56] - Attempting to download new core...
[16:30:56] + Downloading new core: FahCore_b4.exe

[16:31:31] Working on Unit 04 [April 6 16:31:31]
[16:31:31] + Working ...
[16:31:31] *********************** Log Started 06/Apr/2010 16:31:31 ************
***********
[16:31:31] ************************** ProtoMol Folding@Home Core ***************
***********
[16:31:31]   Version: 23
[16:31:31]      Type: 180
[16:31:31]      Core: ProtoMol
[16:31:31]   Website: http://folding.stanford.edu/
[16:31:31] Copyright: (c) 2009 Stanford University
[16:31:31]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[16:31:31]      Args: -dir work/ -suffix 04 -priority 96 -checkpoint 30 -forceas
m -lifeline
[16:31:31]            11751 -version 602
[16:31:31] ************************************ Build *************************************
[16:31:31]      Date: Mar 21 2010
[16:31:31]      Time: 10:27:10
[16:31:31]  Revision: 1789
[16:31:31]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[16:31:31]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[16:31:31]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[16:31:31]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[16:31:31]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[16:31:31]  Platform: Linux 2.4.27-3-386
[16:31:31]      Bits: 32
[16:31:31]      Mode: Release
[16:31:31] ************************************ System ************************************
[16:31:31]        OS: Linux 2.6.16 i686
[16:31:31]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[16:31:31]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[16:31:31]      CPUs: 1 Logical, 1 Physical
[16:31:31]    Memory: 3.99 GB
[16:31:31]   Threads: Linux
[16:31:31] ********************************************************************************
[16:31:31] Project: 10012 (Run 161, Clone 0, Gen 0)
[16:31:31] Digital signatures verified
[16:31:31] ERROR: fah/os/Thread.cpp:169:starter: Exception: In thread 12: @ fah/net/Socket.cpp:128:bind 0: Could not bind socket to 127.0.0.1:52753: Address already in use
[16:31:31] Completed 0 out of 499375 steps (0%)
[16:35:50] Completed 5000 out of 499375 steps (1%)

[05:45:08] Completed 499300 out of 499375 steps (99%)
[05:45:16] Saving result file logfile_04.txt
[05:45:16] Saving result file checkpt
[05:45:16] Saving result file checkpt.crc
[05:45:16] Saving result file log.txt
[05:45:19] Saving result file protomol.conf
[05:45:19] Saving result file ww.26.pos
[05:45:19] Saving result file ww.26.vel
[05:45:19] Saving result file ww.dcd
[05:45:21] Folding@home Core Shutdown: FINISHED_UNIT
[05:45:21] CoreStatus = 64 (100)

[05:45:21] Sending work to server
[05:45:21] - Preparing to get new work unit...
[05:45:21] + Attempting to get work packet
[05:45:21] - Connecting to assignment server
[05:45:21] - Successful: assigned to (129.74.85.15).
[05:45:21] + News From Folding@Home: Welcome to Folding@Home
[05:45:21] Loaded queue successfully.
[05:45:22] + Closed connections
[05:45:22] 
[05:45:22] + Processing work unit
[05:45:22] Core required: FahCore_b4.exe
[05:45:22] Core found.
[05:45:22] Working on Unit 05 [April 7 05:45:22]

[19:15:48] Completed 499300 out of 499375 steps (99%)
[19:15:56] Saving result file logfile_05.txt
[19:15:56] Saving result file checkpt
[19:15:56] Saving result file checkpt.crc
[19:15:56] Saving result file log.txt
[19:16:01] Saving result file protomol.conf
[19:16:01] Saving result file ww.dcd
[19:16:02] Saving result file ww_structure_14_charm.26.pos
[19:16:02] Saving result file ww_structure_14_charm.26.vel
[19:16:02] Folding@home Core Shutdown: FINISHED_UNIT
[19:16:02] CoreStatus = 64 (100)
[19:16:02] Sending work to server
[19:16:02] - Preparing to get new work unit...
[19:16:02] + Attempting to get work packet
[19:16:02] - Connecting to assignment server
[19:16:03] - Successful: assigned to (129.74.85.15).

[19:16:08] Working on Unit 06 [April 7 19:16:08]
[19:16:08] + Working ...
[19:16:09] *********************** Log Started 07/Apr/2010 19:16:09 ************
[09:44:27] Completed 494400 out of 499375 steps (99%)
[09:53:50] Completed 499300 out of 499375 steps (99%)
[09:54:00] Saving result file logfile_06.txt
[09:54:00] Saving result file checkpt
[09:54:00] Saving result file checkpt.crc
[09:54:00] Saving result file log.txt
[09:54:05] Saving result file protomol.conf
[09:54:05] Saving result file ww.29.pos
[09:54:05] Saving result file ww.29.vel
[09:54:05] Saving result file ww.dcd
[09:54:07] Folding@home Core Shutdown: FINISHED_UNIT
[09:54:07] CoreStatus = 64 (100)
[09:54:07] Sending work to server
[09:54:07] - Preparing to get new work unit...
[09:54:07] + Attempting to get work packet
[09:54:07] - Connecting to assignment server
[09:54:07] - Successful: assigned to (129.74.85.15).

[09:54:10] Working on Unit 07 [April 8 09:54:10]
[09:54:10] + Working ...

[21:49:27] Completed 499300 out of 499375 steps (99%)
[21:49:35] Saving result file logfile_07.txt
[21:49:35] Saving result file checkpt
[21:49:35] Saving result file checkpt.crc
[21:49:35] Saving result file log.txt
[21:49:39] Saving result file protomol.conf
[21:49:39] Saving result file ww.23.pos
[21:49:39] Saving result file ww.23.vel
[21:49:39] Saving result file ww.dcd
[21:49:40] Folding@home Core Shutdown: FINISHED_UNIT
[21:49:41] CoreStatus = 64 (100)
[21:49:41] Sending work to server
[21:49:41] - Preparing to get new work unit...
[21:49:41] + Attempting to get work packet
[21:49:41] - Connecting to assignment server
[21:49:41] - Successful: assigned to (129.74.85.15).

[21:49:42] Working on Unit 08 [April 8 21:49:42]
[21:49:42] + Working ...

[05:31:58] Completed 244700 out of 499375 steps (49%)
[05:41:56] Completed 249700 out of 499375 steps (50%)

On that run I noticed no message of success sending work to server?
I know it works because of this next unique instance of myself.
fah-web.stanford.edu/cgi-bin/main.py?qtype=userpage&username=irontom&teamnum=11734

Code: Select all


[07:31:50] - Ask before connecting: No
[07:31:50] - User name: irontom (Team 11734)
[07:31:50] - User ID: F14C3685...
[07:31:50] - Machine ID: 6
[07:31:50] 
[07:31:50] Loaded queue successfully.
[07:31:50] 
[07:31:50] + Processing work unit
[07:31:50] Core required: FahCore_78.exe
[07:31:50] - Read packet limit of 540015616... [07:31:50] Core found.
Set to 524286976.
[07:31:50] Working on Unit 04 [April 3 07:31:50]

[23:29:36] + Attempting to send results
[23:29:44] + Results successfully sent
[23:29:44] Thank you for your contribution to Folding@Home.
[23:29:44] + Number of Units Completed: 15

[23:29:44] - Preparing to get new work unit...
[23:29:44] + Attempting to get work packet
[23:29:44] - Connecting to assignment server
[23:29:45] - Successful: assigned to (129.74.85.15).
[23:29:45] + News From Folding@Home: Welcome to Folding@Home
[23:29:45] Loaded queue successfully.
[23:29:46] + Closed connections
[23:29:46] 
[23:29:46] + Processing work unit
[23:29:46] Core required: FahCore_b4.exe

[23:31:27] + Processing work unit
[23:31:27] Core required: FahCore_b4.exe
[23:31:27] Core found.
[23:31:27] Working on Unit 06 [April 7 23:31:27]
[23:31:27] + Working ...
[23:31:28] *********************** Log Started 07/Apr/2010 23:31:27 ************
***********
[23:31:28] ************************** ProtoMol Folding@Home Core ***************

[13:00:57] Completed 499300 out of 499375 steps (99%)
[13:01:07] Saving result file logfile_06.txt
[13:01:07] Saving result file checkpt
[13:01:07] Saving result file checkpt.crc
[13:01:07] Saving result file log.txt
[13:01:13] Saving result file protomol.conf
[13:01:13] Saving result file ww.26.pos
[13:01:13] Saving result file ww.26.vel
[13:01:13] Saving result file ww.dcd
[13:01:14] Folding@home Core Shutdown: FINISHED_UNIT
[13:01:14] CoreStatus = 64 (100)
[13:01:14] Sending work to server
[13:01:14] - Read packet limit of 540015616... Set to 524286976.


[13:01:14] + Attempting to send results
[15:11:27] - Couldn't send HTTP request to server
[15:11:27] + Could not connect to Work Server (results)
[15:11:27]     (129.74.85.15:8080)

[15:11:27] - Error: Could not transmit unit 06 (completed April 8) to work server.
[15:11:27]   Keeping unit 06 in queue.
[15:11:27] - Read packet limit of 540015616... Set to 524286976.


[15:11:27] + Attempting to send results
[15:12:21] + Results successfully sent
[15:12:21] Thank you for your contribution to Folding@Home.
[15:12:21] + Number of Units Completed: 16

[15:12:23] Core required: FahCore_b4.exe
[15:12:23] Core found.
[15:12:23] Working on Unit 07 [April 8 15:12:23]
[15:12:23] + Working ...

[03:32:16] Completed 499300 out of 499375 steps (99%)
[03:32:24] Saving result file logfile_07.txt
[03:32:24] Saving result file checkpt
[03:32:24] Saving result file checkpt.crc
[03:32:24] Saving result file log.txt
[03:32:28] Saving result file protomol.conf
[03:32:28] Saving result file ww.24.pos
[03:32:28] Saving result file ww.24.vel
[03:32:28] Saving result file ww.dcd
[03:32:29] Folding@home Core Shutdown: FINISHED_UNIT
[03:32:29] CoreStatus = 64 (100)
[03:32:29] Sending work to server
[03:32:29] - Read packet limit of 540015616... Set to 524286976.


[03:32:29] + Attempting to send results
[03:33:14] + Results successfully sent
[03:33:14] Thank you for your contribution to Folding@Home.
[03:33:14] + Number of Units Completed: 17

working cores

Code: Select all


[16:27:29] ************************** ProtoMol Folding@Home Core **************************
[16:27:29]   Version: 23
[16:27:29]      Type: 180
[16:27:29]      Core: ProtoMol
[16:27:29]   Website: http://folding.stanford.edu/
[16:27:29] Copyright: (c) 2009 Stanford University
[16:27:29]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[16:27:29]      Args: -dir work/ -suffix 07 -priority 96 -checkpoint 30 -forceasm -lifeline
[16:27:29]            11747 -version 602
[16:27:29] ************************************ Build *************************************
[16:27:29]      Date: Mar 21 2010
[16:27:29]      Time: 10:27:10
[16:27:29]  Revision: 1789

[16:27:29] Project: 10013 (Run 81, Clone 0, Gen 0)

[06:12:31] CoreStatus = 64 (100)
[06:12:31] Sending work to server
[06:12:31] - Read packet limit of 540015616... Set to 524286976.


[06:12:31] + Attempting to send results
[06:13:18] + Results successfully sent
[06:13:18] Thank you for your contribution to Folding@Home.
[06:13:18] + Number of Units Completed: 17

[06:13:21] Project: 10014 (Run 1832, Clone 0, Gen 0)
[20:08:59] CoreStatus = 64 (100)
[20:08:59] Sending work to server
[20:08:59] - Read packet limit of 540015616... Set to 524286976.


[20:08:59] + Attempting to send results
[20:10:49] + Results successfully sent
[20:10:49] Thank you for your contribution to Folding@Home.
[20:10:49] + Number of Units Completed: 18

[20:10:58] Project: 10019 (Run 288, Clone 0, Gen 1)

Code: Select all


[23:31:28] ************************** ProtoMol Folding@Home Core **************************
[23:31:28]   Version: 23
[23:31:28]      Type: 180
[23:31:28]      Core: ProtoMol
[23:31:28]   Website: http://folding.stanford.edu/
[23:31:28] Copyright: (c) 2009 Stanford University
[23:31:28]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[23:31:28]      Args: -dir work/ -suffix 06 -priority 96 -checkpoint 30 -forceasm -lifeline
[23:31:28]            11749 -version 602
[23:31:28] ************************************ Build *************************************
[23:31:28]      Date: Mar 21 2010
[23:31:28]      Time: 10:27:10
[23:31:28]  Revision: 1789

[23:31:28] Project: 10012 (Run 3180, Clone 0, Gen 0)
[13:01:14] Sending work to server
[13:01:14] - Read packet limit of 540015616... Set to 524286976.


[13:01:14] + Attempting to send results
[15:11:27] - Couldn't send HTTP request to server
[15:11:27] + Could not connect to Work Server (results)
[15:11:27]     (129.74.85.15:8080)
[15:11:27] - Error: Could not transmit unit 06 (completed April 8) to work server.
[15:11:27]   Keeping unit 06 in queue.
[15:11:27] - Read packet limit of 540015616... Set to 524286976.


[15:11:27] + Attempting to send results
[15:12:21] + Results successfully sent
[15:12:21] Thank you for your contribution to Folding@Home

[15:12:23] Project: 10020 (Run 3754, Clone 0, Gen 0)
[03:32:29] CoreStatus = 64 (100)
[03:32:29] Sending work to server
[03:32:29] - Read packet limit of 540015616... Set to 524286976.


[03:32:29] + Attempting to send results
[03:33:14] + Results successfully sent
[03:33:14] Thank you for your contribution to Folding@Home.
[03:33:14] + Number of Units Completed: 17

[03:33:17] Project: 10015 (Run 4131, Clone 0, Gen 0)
[05:38:49] Completed 119900 out of 499375 steps (24%)

Code: Select all

[16:45:56] ************************** ProtoMol Folding@Home Core **************************
[16:45:56]   Version: 23
[16:45:56]      Type: 180
[16:45:56]      Core: ProtoMol
[16:45:56]   Website: http://folding.stanford.edu/
[16:45:56] Copyright: (c) 2009 Stanford University
[16:45:56]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[16:45:56]      Args: -dir work/ -suffix 06 -priority 96 -checkpoint 30 -forceasm -lifeline
[16:45:56]            11750 -version 602
[16:45:56] ************************************ Build *************************************
[16:45:56]      Date: Mar 21 2010
[16:45:56]      Time: 10:27:10
[16:45:56]  Revision: 1789

[16:45:56] Project: 10016 (Run 251, Clone 0, Gen 0)
[07:48:12] CoreStatus = 64 (100)
[07:48:12] Sending work to server
[07:48:12] - Read packet limit of 540015616... Set to 524286976.


[07:48:12] + Attempting to send results
[07:49:12] + Results successfully sent
[07:49:12] Thank you for your contribution to Folding@Home.
[07:49:12] + Number of Units Completed: 16

[07:49:13] - Successful: assigned to (129.74.85.15)
[07:49:18] Project: 10015 (Run 2003, Clone 0, Gen 0)

[21:48:35] CoreStatus = 64 (100)
[21:48:35] Sending work to server
[21:48:35] - Read packet limit of 540015616... Set to 524286976.


[21:48:35] + Attempting to send results
[21:50:21] + Results successfully sent
[21:50:21] Thank you for your contribution to Folding@Home.
[21:50:21] + Number of Units Completed: 17

[21:50:22] - Successful: assigned to (171.64.65.111).

[21:50:49] Core required: FahCore_78.exe
[21:50:49] Core found.
[21:50:49] Working on Unit 08 [April 7 21:50:49]
[21:50:49] + Working ...
[21:50:49] 
[21:50:49] *------------------------------*
[21:50:49] Folding@Home Gromacs Core
[21:50:49] Version 1.90 (March 8, 2006)
[16:38:33] *********************** Log Started 08/Apr/2010 16:38:33 ***********************

[16:38:33] ************************** ProtoMol Folding@Home Core **************************
[16:38:33]   Version: 23
[16:38:33]      Type: 180
[16:38:33]      Core: ProtoMol
[16:38:33]   Website: http://folding.stanford.edu/
[16:38:33] Copyright: (c) 2009 Stanford University
[16:38:33]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[16:38:33]      Args: -dir work/ -suffix 09 -priority 96 -checkpoint 30 -forceasm -lifeline
[16:38:33]            11750 -version 602
[16:38:33] ************************************ Build *************************************
[16:38:33]      Date: Mar 21 2010
[16:38:33]      Time: 10:27:10
[16:38:33]  Revision: 1789

[16:38:33] Project: 10013 (Run 3856, Clone 0, Gen 0)
[05:45:47] Completed 479400 out of 499375 steps (96%)

non working cores

Code: Select all

[04:54:04] ************************** ProtoMol Folding@Home Core ***************
***********
[04:54:04]   Version: 23
[04:54:04]      Type: 180
[04:54:04]      Core: ProtoMol
[04:54:04]   Website: http://folding.stanford.edu/
[04:54:04] Copyright: (c) 2009 Stanford University
[04:54:04]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[04:54:04]      Args: -dir work/ -suffix 00 -priority 96 -checkpoint 30 -forceas
m -lifeline
[04:54:04]            11745 -version 602
[04:54:04] ************************************ Build **************************
***********
[04:54:04]      Date: Mar 21 2010
[04:54:04]      Time: 10:27:10
[04:54:04]  Revision: 1789


[15:44:11] Project: 10012 (Run 2749, Clone 0, Gen 0)

[04:54:01] CoreStatus = 64 (100)
[04:54:01] Sending work to server
[04:54:01] - Preparing to get new work unit...
[04:54:01] + Attempting to get work packet
[04:54:01] - Connecting to assignment server
[04:54:02] - Successful: assigned to (129.74.85.15)

[04:54:04] Project: 10016 (Run 2279, Clone 0, Gen 1)

[21:18:55] CoreStatus = 64 (100)
[21:18:55] Sending work to server
[21:18:55] - Preparing to get new work unit...
[21:18:55] + Attempting to get work packet
[21:18:55] - Connecting to assignment server
[21:18:55] - Successful: assigned to (129.74.85.15)

[21:18:59] Project: 10015 (Run 1696, Clone 0, Gen 2)

[05:39:20] Completed 259700 out of 499375 steps (52%)

Code: Select all


[00:48:23] ************************** ProtoMol Folding@Home Core **************************
[00:48:23]   Version: 23
[00:48:23]      Type: 180
[00:48:23]      Core: ProtoMol
[00:48:23]   Website: http://folding.stanford.edu/
[00:48:23] Copyright: (c) 2009 Stanford University
[00:48:23]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[00:48:23]      Args: -dir work/ -suffix 02 -priority 96 -checkpoint 30 -forceasm -lifeline
[00:48:23]            11746 -version 602
[00:48:23] ************************************ Build *************************************
[00:48:23]      Date: Mar 21 2010
[00:48:23]      Time: 10:27:10
[00:48:23]  Revision: 1789

[16:22:00] Project: 10016 (Run 82, Clone 0, Gen 0)

[06:13:48] CoreStatus = 64 (100)
[06:13:48] Sending work to server
[06:13:48] - Preparing to get new work unit...
[06:13:48] + Attempting to get work packet
[06:13:48] - Connecting to assignment server
[06:13:48] - Successful: assigned to (129.74.85.15).

[06:13:50] Project: 10016 (Run 1852, Clone 0, Gen 0)

[19:24:35] CoreStatus = 64 (100)
[19:24:35] Sending work to server
[19:24:35] - Preparing to get new work unit...
[19:24:35] + Attempting to get work packet
[19:24:35] - Connecting to assignment server
[19:24:35] - Successful: assigned to (129.74.85.15).

[19:24:38] Project: 10019 (Run 1003, Clone 0, Gen 1)

[12:12:29] CoreStatus = 64 (100)
[12:12:29] Sending work to server
[12:12:29] - Preparing to get new work unit...
[12:12:29] + Attempting to get work packet
[12:12:29] - Connecting to assignment server
[12:12:29] - Successful: assigned to (129.74.85.15).

[12:12:31] Project: 10015 (Run 3637, Clone 0, Gen 0)

[00:48:13] CoreStatus = 64 (100)
[00:48:13] Sending work to server
[00:48:13] - Preparing to get new work unit...
[00:48:13] + Attempting to get work packet
[00:48:13] - Connecting to assignment server
[00:48:13] - Successful: assigned to (129.74.85.15).


[00:48:23] Project: 10017 (Run 3448, Clone 0, Gen 1)

[05:45:27] Completed 169800 out of 499375 steps (34%)

Code: Select all

[16:18:38] - Successful: assigned to (129.74.85.15)


[16:18:58] ************************** ProtoMol Folding@Home Core **************************
[16:18:58]   Version: 23
[16:18:58]      Type: 180
[16:18:58]      Core: ProtoMol
[16:18:58]   Website: http://folding.stanford.edu/
[16:18:58] Copyright: (c) 2009 Stanford University
[16:18:58]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[16:18:58]      Args: -dir work/ -suffix 09 -priority 96 -checkpoint 30 -forceasm -lifeline
[16:18:58]            11748 -version 602
[16:18:58] ************************************ Build *************************************
[16:18:58]      Date: Mar 21 2010
[16:18:58]      Time: 10:27:10
[16:18:58]  Revision: 1789

[16:18:58] Project: 10017 (Run 72, Clone 0, Gen 0)

[06:06:42] CoreStatus = 64 (100)
[06:06:42] Sending work to server
[06:06:42] - Preparing to get new work unit...
[06:06:42] + Attempting to get work packet
[06:06:42] - Connecting to assignment server
[06:06:42] - Successful: assigned to (129.74.85.15).

[06:06:46] Project: 10016 (Run 1840, Clone 0, Gen 0)

[19:36:49] CoreStatus = 64 (100)
[19:36:49] Sending work to server
[19:36:49] - Preparing to get new work unit...
[19:36:49] + Attempting to get work packet
[19:36:49] - Connecting to assignment server
[19:36:49] - Successful: assigned to (129.74.85.15).

[19:36:51] Project: 10019 (Run 3015, Clone 0, Gen 0)

[08:25:19] CoreStatus = 64 (100)
[08:25:19] Sending work to server
[08:25:19] - Preparing to get new work unit...
[08:25:19] + Attempting to get work packet
[08:25:19] - Connecting to assignment server
[08:25:20] - Successful: assigned to (129.74.85.15).

[08:25:22] Project: 10012 (Run 3481, Clone 0, Gen 0)

[21:15:20] CoreStatus = 64 (100)
[21:15:20] Sending work to server
[21:15:20] - Preparing to get new work unit...
[21:15:20] + Attempting to get work packet
[21:15:20] - Connecting to assignment server
[21:15:20] - Successful: assigned to (129.74.85.15).

[21:15:24] Project: 10013 (Run 3619, Clone 0, Gen 1)

[05:44:39] Completed 259700 out of 499375 steps (52%)

Code: Select all

[16:31:31] *********************** Log Started 06/Apr/2010 16:31:31 ***********************
[16:31:31] ************************** ProtoMol Folding@Home Core **************************
[16:31:31]   Version: 23
[16:31:31]      Type: 180
[16:31:31]      Core: ProtoMol
[16:31:31]   Website: http://folding.stanford.edu/
[16:31:31] Copyright: (c) 2009 Stanford University
[16:31:31]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[16:31:31]      Args: -dir work/ -suffix 04 -priority 96 -checkpoint 30 -forceasm -lifeline
[16:31:31]            11751 -version 602
[16:31:31] ************************************ Build *************************************
[16:31:31]      Date: Mar 21 2010
[16:31:31]      Time: 10:27:10
[16:31:31]  Revision: 1789

[16:31:31] Project: 10012 (Run 161, Clone 0, Gen 0)

[05:45:21] CoreStatus = 64 (100)
[05:45:21] Sending work to server
[05:45:21] - Preparing to get new work unit...
[05:45:21] + Attempting to get work packet
[05:45:21] - Connecting to assignment server
[05:45:21] - Successful: assigned to (129.74.85.15).

[05:45:23] Project: 10009 (Run 1814, Clone 0, Gen 0)

[19:16:02] CoreStatus = 64 (100)
[19:16:02] Sending work to server
[19:16:02] - Preparing to get new work unit...
[19:16:02] + Attempting to get work packet
[19:16:02] - Connecting to assignment server
[19:16:03] - Successful: assigned to (129.74.85.15).

[06:13:50] Project: 10016 (Run 1852, Clone 0, Gen 0)
[19:24:38] Project: 10019 (Run 1003, Clone 0, Gen 1)

[12:12:31] Project: 10015 (Run 3637, Clone 0, Gen 0)

[09:54:07] CoreStatus = 64 (100)
[09:54:07] Sending work to server
[09:54:07] - Preparing to get new work unit...
[09:54:07] + Attempting to get work packet
[09:54:07] - Connecting to assignment server
[09:54:07] - Successful: assigned to (129.74.85.15).

[09:54:10] Project: 10017 (Run 3553, Clone 0, Gen 0)

[21:49:41] CoreStatus = 64 (100)
[21:49:41] Sending work to server
[21:49:41] - Preparing to get new work unit...
[21:49:41] + Attempting to get work packet
[21:49:41] - Connecting to assignment server
[21:49:41] - Successful: assigned to (129.74.85.15).

[21:49:43] Project: 10019 (Run 111, Clone 0, Gen 2)

[05:41:56] Completed 249700 out of 499375 steps (50%)

Would it be possible to manually install the core from the working directory into another?

Also would love to see you working with the FreeBSD team to get a native smp client.

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Fri Apr 09, 2010 7:50 pm

by Hyperlife

It's hard to tell what exactly is happening when you edit the logs like that. Also, could you add the "-verbosity 9" flag next time you launch your clients so we can get more detailed logs?

You should be able to copy the core file from one working directory to another. Just make sure the permissions remain the same.

Unfortunately, it is extremely unlikely we'll see a native SMP client for FreeBSD. I'm holding out hope for a 32-bit Linux SMP client that works with FreeBSD's emulation.

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Fri Apr 09, 2010 9:19 pm

by IronTom

Thank you for the reply. I will add verbosety -9
I tied to move the working core here is the log

Code: Select all


--- Opening Log file [April 9 05:56:55] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -oneunit -freeBSD 

[05:56:55] - Ask before connecting: No
[05:56:55] - User name: ironTom (Team 11743)
[05:56:55] - User ID: 524512...
[05:56:55] - Machine ID: 5
[05:56:55] 
[05:56:56] Loaded queue successfully.
[05:56:56] 
[05:56:56] - Read packet limit of 540015616... [05:56:56] + Processing work unit
Set to 524286976.
[05:56:56] Core required: FahCore_b4.exe
[05:56:56] Core found.
[05:56:56] Working on Unit 03 [April 9 05:56:56]
[05:56:56] + Working ...
[05:56:56] *********************** Log Started 09/Apr/2010 05:56:56 ***********************
[05:56:56] ************************** ProtoMol Folding@Home Core **************************
[05:56:56]   Version: 23
[05:56:56]      Type: 180
[05:56:56]      Core: ProtoMol
[05:56:56]   Website: http://folding.stanford.edu/
[05:56:56] Copyright: (c) 2009 Stanford University
[05:56:56]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[05:56:56]      Args: -dir work/ -suffix 03 -priority 96 -checkpoint 30 -lifeline 29967
[05:56:56]            -version 602
[05:56:56] ************************************ Build *************************************
[05:56:56]      Date: Mar 21 2010
[05:56:56]      Time: 10:27:10
[05:56:56]  Revision: 1789
[05:56:56]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[05:56:56]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[05:56:56]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[05:56:56]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[05:56:56]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[05:56:56]  Platform: Linux 2.4.27-3-386
[05:56:56]      Bits: 32
[05:56:56]      Mode: Release
[05:56:56] ************************************ System ************************************
[05:56:56]        OS: Linux 2.6.16 i686
[05:56:56]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[05:56:56]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[05:56:56]      CPUs: 1 Logical, 1 Physical
[05:56:56]    Memory: 3.99 GB
[05:56:56]   Threads: Linux
[05:56:56] ********************************************************************************
[05:56:56] Project: 10013 (Run 3619, Clone 0, Gen 1)
[05:56:56] Digital signatures verified
[05:56:57] ERROR: fah/os/Thread.cpp:169:starter: Exception: In thread 12: @ fah/net/Socket.cpp:128:bind 0: Could not bind socket to 127.0.0.1:52753: Address already in use
[05:56:57] Completed 261600 out of 499375 steps (52%)
[06:03:15] Completed 264700 out of 499375 steps (53%)
[06:13:50] Completed 269700 out of 499375 steps (54%)
[06:23:53] Completed 274700 out of 499375 steps (55%)
[06:34:53] Completed 279700 out of 499375 steps (56%)
[06:45:17] Completed 284700 out of 499375 steps (57%)
[06:55:03] Completed 289600 out of 499375 steps (57%)
[07:05:19] Completed 294600 out of 499375 steps (58%)
[07:14:59] Completed 299600 out of 499375 steps (59%)
[07:24:35] Completed 304600 out of 499375 steps (60%)
[07:34:22] Completed 309600 out of 499375 steps (61%)
[07:44:21] Completed 314600 out of 499375 steps (62%)

Folding@Home Client Shutdown.


--- Opening Log file [April 9 08:03:41] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -configonly -forceasm -freeBSD 

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[08:03:41] - Ask before connecting: No
[08:03:41] - User name: ironTom (Team 11743)
[08:03:41] - User ID: 5245122D2D926AF4
[08:03:41] - Machine ID: 5
[08:03:41] 
[08:03:41] Configuring Folding@Home...


[08:04:12] - Ask before connecting: No
[08:04:12] - User name: ironTom (Team 11743)
[08:04:12] - User ID: 5245122D2D926AF4
[08:04:12] - Machine ID: 5
[08:04:12] 
[08:04:12] -configonly flag given, so exiting.


--- Opening Log file [April 9 10:13:41] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -oneunit -forceasm -freeBSD 

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[10:13:41] - Ask before connecting: No
[10:13:41] - User name: ironTom (Team 11743)
[10:13:41] - User ID: 5245122D2D926AF4
[10:13:41] - Machine ID: 5
[10:13:41] 
[10:13:41] Loaded queue successfully.
[10:13:41] 
[10:13:41] + Processing work unit
[10:13:41] - Read packet limit of 540015616... [10:13:41] Core required: FahCore_b4.exe
Set to 524286976.
[10:13:41] Core found.
[10:13:41] Working on Unit 03 [April 9 10:13:41]
[10:13:41] + Working ...
[10:13:41] *********************** Log Started 09/Apr/2010 10:13:41 ***********************
[10:13:41] ************************** ProtoMol Folding@Home Core **************************
[10:13:41]   Version: 23
[10:13:41]      Type: 180
[10:13:41]      Core: ProtoMol
[10:13:41]   Website: http://folding.stanford.edu/
[10:13:41] Copyright: (c) 2009 Stanford University
[10:13:41]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[10:13:41]      Args: -dir work/ -suffix 03 -priority 96 -checkpoint 30 -forceasm -lifeline
[10:13:41]            30942 -version 602
[10:13:41] ************************************ Build *************************************
[10:13:41]      Date: Mar 21 2010
[10:13:41]      Time: 10:27:10
[10:13:41]  Revision: 1789
[10:13:41]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[10:13:41]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[10:13:41]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[10:13:41]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[10:13:41]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[10:13:41]  Platform: Linux 2.4.27-3-386
[10:13:41]      Bits: 32
[10:13:41]      Mode: Release
[10:13:41] ************************************ System ************************************
[10:13:41]        OS: Linux 2.6.16 i686
[10:13:41]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[10:13:41]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[10:13:41]      CPUs: 1 Logical, 1 Physical
[10:13:41]    Memory: 3.99 GB
[10:13:41]   Threads: Linux
[10:13:41] ********************************************************************************
[10:13:41] Project: 10013 (Run 3619, Clone 0, Gen 1)
[10:13:41] Digital signatures verified
[10:13:41] ERROR: Guru Meditation #4a7c68743e980792.2df06b68caaa7f76 (3062724.3062724) 'work/03/ww.dcd'
[10:13:41] WARNING: Unexpected exit() call
[10:13:41] WARNING: Unexpected exit from science code
[10:13:41] Saving result file logfile_03.txt
[10:13:41] Saving result file checkpt
[10:13:41] Saving result file checkpt.crc
[10:13:41] Saving result file log.txt
[10:13:44] Saving result file protomol.conf
[10:13:44] Saving result file ww.80.pos
[10:13:44] Saving result file ww.80.vel
[10:13:44] ERROR: Guru Meditation #4a7c68743e980792.2df06b68caaa7f76 (3062724.3062724) 'work/03/ww.dcd'
[10:13:44] CoreStatus = 70 (112)
[10:13:44] + The core could not validate the current work unit for processing.
[10:13:44] Deleting current work unit & continuing...
[10:13:44] - Preparing to get new work unit...
[10:13:44] + Attempting to get work packet
[10:13:44] - Connecting to assignment server
[10:13:44] - Successful: assigned to (129.74.85.15).
[10:13:44] + News From Folding@Home: Welcome to Folding@Home
[10:13:45] Loaded queue successfully.
[10:13:47] + Closed connections
[10:13:52] 
[10:13:52] + Processing work unit
[10:13:52] Core required: FahCore_b4.exe
[10:13:52] Core found.
[10:13:52] Working on Unit 04 [April 9 10:13:52]
[10:13:52] + Working ...
[10:13:55] *********************** Log Started 09/Apr/2010 10:13:55 ***********************
[10:13:55] ************************** ProtoMol Folding@Home Core **************************
[10:13:55]   Version: 23
[10:13:55]      Type: 180
[10:13:55]      Core: ProtoMol
[10:13:55]   Website: http://folding.stanford.edu/
[10:13:55] Copyright: (c) 2009 Stanford University
[10:13:55]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[10:13:55]      Args: -dir work/ -suffix 04 -priority 96 -checkpoint 30 -forceasm -lifeline
[10:13:55]            30942 -version 602
[10:13:55] ************************************ Build *************************************
[10:13:55]      Date: Mar 21 2010
[10:13:55]      Time: 10:27:10
[10:13:55]  Revision: 1789
[10:13:55]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[10:13:55]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[10:13:55]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[10:13:55]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[10:13:55]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[10:13:55]  Platform: Linux 2.4.27-3-386
[10:13:55]      Bits: 32
[10:13:55]      Mode: Release
[10:13:55] ************************************ System ************************************
[10:13:55]        OS: Linux 2.6.16 i686
[10:13:55]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[10:13:55]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[10:13:55]      CPUs: 1 Logical, 1 Physical
[10:13:55]    Memory: 3.99 GB
[10:13:55]   Threads: Linux
[10:13:55] ********************************************************************************
[10:13:55] Project: 10009 (Run 3768, Clone 0, Gen 1)
[10:13:55] Reading tar file par_all27_prot_lipid.inp
[10:13:55] Reading tar file scpismQuartic.inp
[10:13:55] Reading tar file par_all27_prot_lipid.inp
[10:13:55] Reading tar file scpismQuartic.inp
[10:13:55] Reading tar file ww_structure_14_charm.pdb
[10:13:55] Reading tar file ww_structure_14_charm.psf
[10:13:55] Reading tar file ww_structure_14_charm.vel
[10:13:55] Reading tar file checkpt
[10:13:55] Reading tar file ww_structure_14_charm.72.pos
[10:13:55] Reading tar file ww_structure_14_charm.72.vel
[10:13:55] Reading tar file protomol.conf
[10:13:55] Reading tar file core.xml
[10:13:55] Digital signatures verified
[10:13:55] Completed 0 out of 499375 steps (0%)
[10:23:53] Completed 5000 out of 499375 steps (1%)
[10:33:46] Completed 10000 out of 499375 steps (2%)
[10:43:32] Completed 15000 out of 499375 steps (3%)
[10:52:57] Completed 20000 out of 499375 steps (4%)
[11:02:17] Completed 25000 out of 499375 steps (5%)
[11:12:03] Completed 30000 out of 499375 steps (6%)
[11:21:38] Completed 35000 out of 499375 steps (7%)
[11:31:04] Completed 40000 out of 499375 steps (8%)
[11:40:33] Completed 45000 out of 499375 steps (9%)
[11:50:00] Completed 50000 out of 499375 steps (10%)
[11:59:26] Completed 55000 out of 499375 steps (11%)
[12:09:04] Completed 60000 out of 499375 steps (12%)
[12:18:46] Completed 65000 out of 499375 steps (13%)
[12:28:27] Completed 70000 out of 499375 steps (14%)
[12:37:30] Completed 74900 out of 499375 steps (14%)
[12:46:58] Completed 79900 out of 499375 steps (16%)
[12:56:23] Completed 84900 out of 499375 steps (17%)
[13:06:06] Completed 89900 out of 499375 steps (18%)
[13:15:23] Completed 94900 out of 499375 steps (19%)
[13:25:00] Completed 99900 out of 499375 steps (20%)
[13:34:34] Completed 104900 out of 499375 steps (21%)
[13:44:11] Completed 109900 out of 499375 steps (22%)
[13:54:04] Completed 114900 out of 499375 steps (23%)
[14:03:54] Completed 119900 out of 499375 steps (24%)
[14:13:52] Completed 124900 out of 499375 steps (25%)
[14:23:23] Completed 129900 out of 499375 steps (26%)
[14:33:00] Completed 134900 out of 499375 steps (27%)
[14:42:59] Completed 139900 out of 499375 steps (28%)
[14:52:42] Completed 144800 out of 499375 steps (28%)
[15:02:30] Completed 149800 out of 499375 steps (29%)
[15:12:30] Completed 154800 out of 499375 steps (30%)
[15:22:20] Completed 159800 out of 499375 steps (32%)
[15:32:13] Completed 164800 out of 499375 steps (33%)
[15:42:11] Completed 169800 out of 499375 steps (34%)
[15:51:49] Completed 174800 out of 499375 steps (35%)
[16:01:55] Completed 179800 out of 499375 steps (36%)
[16:11:36] Completed 184800 out of 499375 steps (37%)
[16:21:01] Completed 189800 out of 499375 steps (38%)
[16:30:45] Completed 194800 out of 499375 steps (39%)
[16:40:38] Completed 199800 out of 499375 steps (40%)
[16:50:30] Completed 204800 out of 499375 steps (41%)
[17:00:10] Completed 209800 out of 499375 steps (42%)
[17:09:49] Completed 214700 out of 499375 steps (42%)
[17:19:23] Completed 219700 out of 499375 steps (43%)
[17:29:05] Completed 224700 out of 499375 steps (44%)
[17:38:59] Completed 229700 out of 499375 steps (45%)
[17:48:36] Completed 234700 out of 499375 steps (46%)
[17:58:05] Completed 239700 out of 499375 steps (48%)
[18:07:49] Completed 244700 out of 499375 steps (49%)
[18:17:29] Completed 249700 out of 499375 steps (50%)
[18:27:39] Completed 254700 out of 499375 steps (51%)
[18:37:53] Completed 259700 out of 499375 steps (52%)
[18:48:05] Completed 264700 out of 499375 steps (53%)
[18:58:04] Completed 269700 out of 499375 steps (54%)
[19:08:16] Completed 274700 out of 499375 steps (55%)
[19:18:27] Completed 279700 out of 499375 steps (56%)
[19:29:16] Completed 284700 out of 499375 steps (57%)
[19:39:17] Completed 289600 out of 499375 steps (57%)
[19:49:30] Completed 294600 out of 499375 steps (58%)
[19:59:40] Completed 299600 out of 499375 steps (59%)
[20:09:39] Completed 304600 out of 499375 steps (60%)
[20:19:38] Completed 309600 out of 499375 steps (61%)
[20:29:45] Completed 314600 out of 499375 steps (62%)
[20:39:42] Completed 319600 out of 499375 steps (64%)
[20:50:04] Completed 324600 out of 499375 steps (65%)
[21:00:06] Completed 329600 out of 499375 steps (66%)

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Fri Apr 09, 2010 9:25 pm

by IronTom

I tried posting the previous failed run but get this error.

Your message contains 96698 characters. The maximum number of allowed characters is 60000.

I can send you the files if you care to look at them

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Fri Apr 09, 2010 10:16 pm

by Hyperlife

The "Could not bind socket" error is harmless -- it happens whenever you run multiple clients with Protomol WUs. See the FAQ here. It shouldn't affect whether your points were credited.

There's also an announcement about v23 of the Protomol core: if you interrupt a WU in the middle, it will start over when you restart the client. That would explain your other error upon restarting the client. Try not to interrupt the WU while it is processing.

As for your points issue, one of the mods might be able to look up if you received credit for the WUs that appear to have uploaded. They need to know the exact "Project (Run, Clone, Gen)" of each WU you want to check, and you edited that info out of your original logs.

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Sat Apr 10, 2010 4:06 am

by bruce

As for your points issue, one of the mods might be able to look up if you received credit for the WUs that appear to have uploaded. They need to know the exact "Project (Run, Clone, Gen)"

Actually, we have two options. The other one is that we can find the most recent WU credited from each client

Code: Select all

LastCredit	LastReturnedWU	Proj	Run	Clone	Gen
336 	2010-04-01 11:02:44 	6316 	437 	2 	66
336 	2010-04-01 12:03:02 	6316 	385 	5 	37
336 	2010-04-01 12:03:02 	6316 	631 	11 	25
336 	2010-04-01 23:02:26 	6315 	539 	15 	39
104 	2010-04-04 00:03:03 	6322 	8 	80 	8
126.25 	2010-04-07 14:03:55 	10014 	1832 	0 	1
126.25 	2010-04-08 21:02:54 	10020 	3754 	0 	1
126.25 	2010-04-08 23:02:53 	10020 	333 	0 	1
126.25 	2010-04-09 00:03:04 	10013 	3856 	0 	1

All times are in the Stanford time-zone: PDT = UTC-7
Sorry that the columns don't line up . . . that's just the way this forum software works.

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Sat Apr 10, 2010 5:06 am

by IronTom

OK the client finished and looks like no success in the log. But i see 1 wu uploaded?
Date of last work unit 2010-04-09 00:03:04
fah-web.stanford.edu/cgi-bin/main.py?qtype=userpage&username=ironTom
I will run it again with verbosity -9 and see what happens.
wonder if i should clean everything out and let it rebuild from scratch?

Another thing to consider is I'm only running one client now if that makes any difference?

Thank you all.

Code: Select all



--- Opening Log file [April 9 05:56:55] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -oneunit -freeBSD 

[05:56:55] - Ask before connecting: No
[05:56:55] - User name: ironTom (Team 11743)
[05:56:55] - User ID: 5245122D2D4...
[05:56:55] - Machine ID: 5
[05:56:55] 
[05:56:56] Loaded queue successfully.
[05:56:56] 
[05:56:56] - Read packet limit of 540015616... [05:56:56] + Processing work unit
Set to 524286976.
[05:56:56] Core required: FahCore_b4.exe
[05:56:56] Core found.
[05:56:56] Working on Unit 03 [April 9 05:56:56]
[05:56:56] + Working ...
[05:56:56] *********************** Log Started 09/Apr/2010 05:56:56 ***********************
[05:56:56] ************************** ProtoMol Folding@Home Core **************************
[05:56:56]   Version: 23
[05:56:56]      Type: 180
[05:56:56]      Core: ProtoMol
[05:56:56]   Website: http://folding.stanford.edu/
[05:56:56] Copyright: (c) 2009 Stanford University
[05:56:56]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[05:56:56]      Args: -dir work/ -suffix 03 -priority 96 -checkpoint 30 -lifeline 29967
[05:56:56]            -version 602
[05:56:56] ************************************ Build *************************************
[05:56:56]      Date: Mar 21 2010
[05:56:56]      Time: 10:27:10
[05:56:56]  Revision: 1789
[05:56:56]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[05:56:56]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[05:56:56]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[05:56:56]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[05:56:56]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[05:56:56]  Platform: Linux 2.4.27-3-386
[05:56:56]      Bits: 32
[05:56:56]      Mode: Release
[05:56:56] ************************************ System ************************************
[05:56:56]        OS: Linux 2.6.16 i686
[05:56:56]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[05:56:56]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[05:56:56]      CPUs: 1 Logical, 1 Physical
[05:56:56]    Memory: 3.99 GB
[05:56:56]   Threads: Linux
[05:56:56] ********************************************************************************
[05:56:56] Project: 10013 (Run 3619, Clone 0, Gen 1)
[05:56:56] Digital signatures verified
[05:56:57] ERROR: fah/os/Thread.cpp:169:starter: Exception: In thread 12: @ fah/net/Socket.cpp:128:bind 0: Could not bind socket to 127.0.0.1:52753: Address already in use
[05:56:57] Completed 261600 out of 499375 steps (52%)
[06:03:15] Completed 264700 out of 499375 steps (53%)
[06:13:50] Completed 269700 out of 499375 steps (54%)
[06:23:53] Completed 274700 out of 499375 steps (55%)
[06:34:53] Completed 279700 out of 499375 steps (56%)
[06:45:17] Completed 284700 out of 499375 steps (57%)
[06:55:03] Completed 289600 out of 499375 steps (57%)
[07:05:19] Completed 294600 out of 499375 steps (58%)
[07:14:59] Completed 299600 out of 499375 steps (59%)
[07:24:35] Completed 304600 out of 499375 steps (60%)
[07:34:22] Completed 309600 out of 499375 steps (61%)
[07:44:21] Completed 314600 out of 499375 steps (62%)

Folding@Home Client Shutdown.


--- Opening Log file [April 9 08:03:41] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -configonly -forceasm -freeBSD 

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[08:03:41] - Ask before connecting: No
[08:03:41] - User name: ironTom (Team 11743)
[08:03:41] - User ID: 5245122D2...
[08:03:41] - Machine ID: 5
[08:03:41] 
[08:03:41] Configuring Folding@Home...


[08:04:12] - Ask before connecting: No
[08:04:12] - User name: ironTom (Team 11743)
[08:04:12] - User ID: 5245122D2D...
[08:04:12] - Machine ID: 5
[08:04:12] 
[08:04:12] -configonly flag given, so exiting.


--- Opening Log file [April 9 10:13:41] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -oneunit -forceasm -freeBSD 

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[10:13:41] - Ask before connecting: No
[10:13:41] - User name: ironTom (Team 11743)
[10:13:41] - User ID: 5245122D2D...
[10:13:41] - Machine ID: 5
[10:13:41] 
[10:13:41] Loaded queue successfully.
[10:13:41] 
[10:13:41] + Processing work unit
[10:13:41] - Read packet limit of 540015616... [10:13:41] Core required: FahCore_b4.exe
Set to 524286976.
[10:13:41] Core found.
[10:13:41] Working on Unit 03 [April 9 10:13:41]
[10:13:41] + Working ...
[10:13:41] *********************** Log Started 09/Apr/2010 10:13:41 ***********************
[10:13:41] ************************** ProtoMol Folding@Home Core **************************
[10:13:41]   Version: 23
[10:13:41]      Type: 180
[10:13:41]      Core: ProtoMol
[10:13:41]   Website: http://folding.stanford.edu/
[10:13:41] Copyright: (c) 2009 Stanford University
[10:13:41]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[10:13:41]      Args: -dir work/ -suffix 03 -priority 96 -checkpoint 30 -forceasm -lifeline
[10:13:41]            30942 -version 602
[10:13:41] ************************************ Build *************************************
[10:13:41]      Date: Mar 21 2010
[10:13:41]      Time: 10:27:10
[10:13:41]  Revision: 1789
[10:13:41]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[10:13:41]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[10:13:41]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[10:13:41]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[10:13:41]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[10:13:41]  Platform: Linux 2.4.27-3-386
[10:13:41]      Bits: 32
[10:13:41]      Mode: Release
[10:13:41] ************************************ System ************************************
[10:13:41]        OS: Linux 2.6.16 i686
[10:13:41]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[10:13:41]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[10:13:41]      CPUs: 1 Logical, 1 Physical
[10:13:41]    Memory: 3.99 GB
[10:13:41]   Threads: Linux
[10:13:41] ********************************************************************************
[10:13:41] Project: 10013 (Run 3619, Clone 0, Gen 1)
[10:13:41] Digital signatures verified
[10:13:41] ERROR: Guru Meditation #4a7c68743e980792.2df06b68caaa7f76 (3062724.3062724) 'work/03/ww.dcd'
[10:13:41] WARNING: Unexpected exit() call
[10:13:41] WARNING: Unexpected exit from science code
[10:13:41] Saving result file logfile_03.txt
[10:13:41] Saving result file checkpt
[10:13:41] Saving result file checkpt.crc
[10:13:41] Saving result file log.txt
[10:13:44] Saving result file protomol.conf
[10:13:44] Saving result file ww.80.pos
[10:13:44] Saving result file ww.80.vel
[10:13:44] ERROR: Guru Meditation #4a7c68743e980792.2df06b68caaa7f76 (3062724.3062724) 'work/03/ww.dcd'
[10:13:44] CoreStatus = 70 (112)
[10:13:44] + The core could not validate the current work unit for processing.
[10:13:44] Deleting current work unit & continuing...
[10:13:44] - Preparing to get new work unit...
[10:13:44] + Attempting to get work packet
[10:13:44] - Connecting to assignment server
[10:13:44] - Successful: assigned to (129.74.85.15).
[10:13:44] + News From Folding@Home: Welcome to Folding@Home
[10:13:45] Loaded queue successfully.
[10:13:47] + Closed connections
[10:13:52] 
[10:13:52] + Processing work unit
[10:13:52] Core required: FahCore_b4.exe
[10:13:52] Core found.
[10:13:52] Working on Unit 04 [April 9 10:13:52]
[10:13:52] + Working ...
[10:13:55] *********************** Log Started 09/Apr/2010 10:13:55 ***********************
[10:13:55] ************************** ProtoMol Folding@Home Core **************************
[10:13:55]   Version: 23
[10:13:55]      Type: 180
[10:13:55]      Core: ProtoMol
[10:13:55]   Website: http://folding.stanford.edu/
[10:13:55] Copyright: (c) 2009 Stanford University
[10:13:55]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[10:13:55]      Args: -dir work/ -suffix 04 -priority 96 -checkpoint 30 -forceasm -lifeline
[10:13:55]            30942 -version 602
[10:13:55] ************************************ Build *************************************
[10:13:55]      Date: Mar 21 2010
[10:13:55]      Time: 10:27:10
[10:13:55]  Revision: 1789
[10:13:55]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[10:13:55]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[10:13:55]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[10:13:55]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[10:13:55]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[10:13:55]  Platform: Linux 2.4.27-3-386
[10:13:55]      Bits: 32
[10:13:55]      Mode: Release
[10:13:55] ************************************ System ************************************
[10:13:55]        OS: Linux 2.6.16 i686
[10:13:55]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[10:13:55]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[10:13:55]      CPUs: 1 Logical, 1 Physical
[10:13:55]    Memory: 3.99 GB
[10:13:55]   Threads: Linux
[10:13:55] ********************************************************************************
[10:13:55] Project: 10009 (Run 3768, Clone 0, Gen 1)
[10:13:55] Reading tar file par_all27_prot_lipid.inp
[10:13:55] Reading tar file scpismQuartic.inp
[10:13:55] Reading tar file par_all27_prot_lipid.inp
[10:13:55] Reading tar file scpismQuartic.inp
[10:13:55] Reading tar file ww_structure_14_charm.pdb
[10:13:55] Reading tar file ww_structure_14_charm.psf
[10:13:55] Reading tar file ww_structure_14_charm.vel
[10:13:55] Reading tar file checkpt
[10:13:55] Reading tar file ww_structure_14_charm.72.pos
[10:13:55] Reading tar file ww_structure_14_charm.72.vel
[10:13:55] Reading tar file protomol.conf
[10:13:55] Reading tar file core.xml
[10:13:55] Digital signatures verified
[10:13:55] Completed 0 out of 499375 steps (0%)
[10:23:53] Completed 5000 out of 499375 steps (1%)
[10:33:46] Completed 10000 out of 499375 steps (2%)
[10:43:32] Completed 15000 out of 499375 steps (3%)
[10:52:57] Completed 20000 out of 499375 steps (4%)
[11:02:17] Completed 25000 out of 499375 steps (5%)
[11:12:03] Completed 30000 out of 499375 steps (6%)
[11:21:38] Completed 35000 out of 499375 steps (7%)
[11:31:04] Completed 40000 out of 499375 steps (8%)
[11:40:33] Completed 45000 out of 499375 steps (9%)
[11:50:00] Completed 50000 out of 499375 steps (10%)
[11:59:26] Completed 55000 out of 499375 steps (11%)
[12:09:04] Completed 60000 out of 499375 steps (12%)
[12:18:46] Completed 65000 out of 499375 steps (13%)
[12:28:27] Completed 70000 out of 499375 steps (14%)
[12:37:30] Completed 74900 out of 499375 steps (14%)
[12:46:58] Completed 79900 out of 499375 steps (16%)
[12:56:23] Completed 84900 out of 499375 steps (17%)
[13:06:06] Completed 89900 out of 499375 steps (18%)
[13:15:23] Completed 94900 out of 499375 steps (19%)
[13:25:00] Completed 99900 out of 499375 steps (20%)
[13:34:34] Completed 104900 out of 499375 steps (21%)
[13:44:11] Completed 109900 out of 499375 steps (22%)
[13:54:04] Completed 114900 out of 499375 steps (23%)
[14:03:54] Completed 119900 out of 499375 steps (24%)
[14:13:52] Completed 124900 out of 499375 steps (25%)
[14:23:23] Completed 129900 out of 499375 steps (26%)
[14:33:00] Completed 134900 out of 499375 steps (27%)
[14:42:59] Completed 139900 out of 499375 steps (28%)
[14:52:42] Completed 144800 out of 499375 steps (28%)
[15:02:30] Completed 149800 out of 499375 steps (29%)
[15:12:30] Completed 154800 out of 499375 steps (30%)
[15:22:20] Completed 159800 out of 499375 steps (32%)
[15:32:13] Completed 164800 out of 499375 steps (33%)
[15:42:11] Completed 169800 out of 499375 steps (34%)
[15:51:49] Completed 174800 out of 499375 steps (35%)
[16:01:55] Completed 179800 out of 499375 steps (36%)
[16:11:36] Completed 184800 out of 499375 steps (37%)
[16:21:01] Completed 189800 out of 499375 steps (38%)
[16:30:45] Completed 194800 out of 499375 steps (39%)
[16:40:38] Completed 199800 out of 499375 steps (40%)
[16:50:30] Completed 204800 out of 499375 steps (41%)
[17:00:10] Completed 209800 out of 499375 steps (42%)
[17:09:49] Completed 214700 out of 499375 steps (42%)
[17:19:23] Completed 219700 out of 499375 steps (43%)
[17:29:05] Completed 224700 out of 499375 steps (44%)
[17:38:59] Completed 229700 out of 499375 steps (45%)
[17:48:36] Completed 234700 out of 499375 steps (46%)
[17:58:05] Completed 239700 out of 499375 steps (48%)
[18:07:49] Completed 244700 out of 499375 steps (49%)
[18:17:29] Completed 249700 out of 499375 steps (50%)
[18:27:39] Completed 254700 out of 499375 steps (51%)
[18:37:53] Completed 259700 out of 499375 steps (52%)
[18:48:05] Completed 264700 out of 499375 steps (53%)
[18:58:04] Completed 269700 out of 499375 steps (54%)
[19:08:16] Completed 274700 out of 499375 steps (55%)
[19:18:27] Completed 279700 out of 499375 steps (56%)
[19:29:16] Completed 284700 out of 499375 steps (57%)
[19:39:17] Completed 289600 out of 499375 steps (57%)
[19:49:30] Completed 294600 out of 499375 steps (58%)
[19:59:40] Completed 299600 out of 499375 steps (59%)
[20:09:39] Completed 304600 out of 499375 steps (60%)
[20:19:38] Completed 309600 out of 499375 steps (61%)
[20:29:45] Completed 314600 out of 499375 steps (62%)
[20:39:42] Completed 319600 out of 499375 steps (64%)
[20:50:04] Completed 324600 out of 499375 steps (65%)
[21:00:06] Completed 329600 out of 499375 steps (66%)
[21:10:04] Completed 334600 out of 499375 steps (67%)
[21:20:09] Completed 339600 out of 499375 steps (68%)
[21:30:40] Completed 344600 out of 499375 steps (69%)
[21:41:06] Completed 349600 out of 499375 steps (70%)
[21:52:07] Completed 354600 out of 499375 steps (71%)
[22:02:47] Completed 359500 out of 499375 steps (71%)
[22:12:57] Completed 364500 out of 499375 steps (72%)
[22:22:51] Completed 369500 out of 499375 steps (73%)
[22:32:34] Completed 374500 out of 499375 steps (74%)
[22:42:32] Completed 379500 out of 499375 steps (75%)
[22:52:24] Completed 384500 out of 499375 steps (76%)
[23:02:15] Completed 389500 out of 499375 steps (77%)
[23:12:19] Completed 394500 out of 499375 steps (78%)
[23:22:02] Completed 399500 out of 499375 steps (80%)
[23:31:57] Completed 404500 out of 499375 steps (81%)
[23:41:28] Completed 409500 out of 499375 steps (82%)
[23:51:19] Completed 414500 out of 499375 steps (83%)
[00:01:22] Completed 419500 out of 499375 steps (84%)
[00:11:03] Completed 424500 out of 499375 steps (85%)
[00:20:37] Completed 429400 out of 499375 steps (85%)
[00:30:18] Completed 434400 out of 499375 steps (86%)
[00:40:04] Completed 439400 out of 499375 steps (87%)
[00:49:32] Completed 444400 out of 499375 steps (88%)
[00:59:23] Completed 449400 out of 499375 steps (89%)
[01:08:58] Completed 454400 out of 499375 steps (90%)
[01:18:25] Completed 459400 out of 499375 steps (91%)
[01:28:05] Completed 464400 out of 499375 steps (92%)
[01:37:41] Completed 469400 out of 499375 steps (93%)
[01:47:03] Completed 474400 out of 499375 steps (94%)
[01:56:37] Completed 479400 out of 499375 steps (96%)
[02:06:02] Completed 484400 out of 499375 steps (97%)
[02:15:20] Completed 489400 out of 499375 steps (98%)
[02:24:26] Completed 494400 out of 499375 steps (99%)
[02:33:53] Completed 499300 out of 499375 steps (99%)
[02:34:02] Saving result file logfile_04.txt
[02:34:02] Saving result file checkpt
[02:34:02] Saving result file checkpt.crc
[02:34:02] Saving result file log.txt
[02:34:06] Saving result file protomol.conf
[02:34:06] Saving result file ww.dcd
[02:34:07] Saving result file ww_structure_14_charm.105.pos
[02:34:07] Saving result file ww_structure_14_charm.105.vel
[02:34:07] Folding@home Core Shutdown: FINISHED_UNIT
[02:34:07] CoreStatus = 64 (100)
[02:34:07] Sending work to server
[02:34:07] + -oneunit flag given and have now finished a unit. Exiting.- Preparing to get new work unit...
[02:34:07] + Attempting to get work packet
[02:34:07] - Connecting to assignment server

Folding@Home Client Shutdown.

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Sat Apr 10, 2010 10:06 pm

by IronTom

Looks like it is not working
[20:05:32] + Sent 0 of 9 completed units to the server
Here is the full log

Code: Select all



--- Opening Log file [April 9 05:56:55] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -oneunit -freeBSD 

[05:56:55] - Ask before connecting: No
[05:56:55] - User name: ironTom (Team 11743)
[05:56:55] - User ID: 5245122D
[05:56:55] - Machine ID: 5
[05:56:55] 
[05:56:56] Loaded queue successfully.
[05:56:56] 
[05:56:56] - Read packet limit of 540015616... [05:56:56] + Processing work unit
Set to 524286976.
[05:56:56] Core required: FahCore_b4.exe
[05:56:56] Core found.
[05:56:56] Working on Unit 03 [April 9 05:56:56]
[05:56:56] + Working ...
[05:56:56] *********************** Log Started 09/Apr/2010 05:56:56 ***********************
[05:56:56] ************************** ProtoMol Folding@Home Core **************************
[05:56:56]   Version: 23
[05:56:56]      Type: 180
[05:56:56]      Core: ProtoMol
[05:56:56]   Website: http://folding.stanford.edu/
[05:56:56] Copyright: (c) 2009 Stanford University
[05:56:56]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[05:56:56]      Args: -dir work/ -suffix 03 -priority 96 -checkpoint 30 -lifeline 29967
[05:56:56]            -version 602
[05:56:56] ************************************ Build *************************************
[05:56:56]      Date: Mar 21 2010
[05:56:56]      Time: 10:27:10
[05:56:56]  Revision: 1789
[05:56:56]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[05:56:56]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[05:56:56]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[05:56:56]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[05:56:56]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[05:56:56]  Platform: Linux 2.4.27-3-386
[05:56:56]      Bits: 32
[05:56:56]      Mode: Release
[05:56:56] ************************************ System ************************************
[05:56:56]        OS: Linux 2.6.16 i686
[05:56:56]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[05:56:56]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[05:56:56]      CPUs: 1 Logical, 1 Physical
[05:56:56]    Memory: 3.99 GB
[05:56:56]   Threads: Linux
[05:56:56] ********************************************************************************
[05:56:56] Project: 10013 (Run 3619, Clone 0, Gen 1)
[05:56:56] Digital signatures verified
[05:56:57] ERROR: fah/os/Thread.cpp:169:starter: Exception: In thread 12: @ fah/net/Socket.cpp:128:bind 0: Could not bind socket to 127.0.0.1:52753: Address already in use
[05:56:57] Completed 261600 out of 499375 steps (52%)
[06:03:15] Completed 264700 out of 499375 steps (53%)
[06:13:50] Completed 269700 out of 499375 steps (54%)
[06:23:53] Completed 274700 out of 499375 steps (55%)
[06:34:53] Completed 279700 out of 499375 steps (56%)
[06:45:17] Completed 284700 out of 499375 steps (57%)
[06:55:03] Completed 289600 out of 499375 steps (57%)
[07:05:19] Completed 294600 out of 499375 steps (58%)
[07:14:59] Completed 299600 out of 499375 steps (59%)
[07:24:35] Completed 304600 out of 499375 steps (60%)
[07:34:22] Completed 309600 out of 499375 steps (61%)
[07:44:21] Completed 314600 out of 499375 steps (62%)

Folding@Home Client Shutdown.


--- Opening Log file [April 9 08:03:41] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -configonly -forceasm -freeBSD 

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[08:03:41] - Ask before connecting: No
[08:03:41] - User name: ironTom (Team 11743)
[08:03:41] - User ID: 5245122D2D
[08:03:41] - Machine ID: 5
[08:03:41] 
[08:03:41] Configuring Folding@Home...


[08:04:12] - Ask before connecting: No
[08:04:12] - User name: ironTom (Team 11743)
[08:04:12] - User ID: 5245122D2D
[08:04:12] - Machine ID: 5
[08:04:12] 
[08:04:12] -configonly flag given, so exiting.


--- Opening Log file [April 9 10:13:41] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -oneunit -forceasm -freeBSD 

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[10:13:41] - Ask before connecting: No
[10:13:41] - User name: ironTom (Team 11743)
[10:13:41] - User ID: 5245122D2
[10:13:41] - Machine ID: 5
[10:13:41] 
[10:13:41] Loaded queue successfully.
[10:13:41] 
[10:13:41] + Processing work unit
[10:13:41] - Read packet limit of 540015616... [10:13:41] Core required: FahCore_b4.exe
Set to 524286976.
[10:13:41] Core found.
[10:13:41] Working on Unit 03 [April 9 10:13:41]
[10:13:41] + Working ...
[10:13:41] *********************** Log Started 09/Apr/2010 10:13:41 ***********************
[10:13:41] ************************** ProtoMol Folding@Home Core **************************
[10:13:41]   Version: 23
[10:13:41]      Type: 180
[10:13:41]      Core: ProtoMol
[10:13:41]   Website: http://folding.stanford.edu/
[10:13:41] Copyright: (c) 2009 Stanford University
[10:13:41]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[10:13:41]      Args: -dir work/ -suffix 03 -priority 96 -checkpoint 30 -forceasm -lifeline
[10:13:41]            30942 -version 602
[10:13:41] ************************************ Build *************************************
[10:13:41]      Date: Mar 21 2010
[10:13:41]      Time: 10:27:10
[10:13:41]  Revision: 1789
[10:13:41]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[10:13:41]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[10:13:41]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[10:13:41]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[10:13:41]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[10:13:41]  Platform: Linux 2.4.27-3-386
[10:13:41]      Bits: 32
[10:13:41]      Mode: Release
[10:13:41] ************************************ System ************************************
[10:13:41]        OS: Linux 2.6.16 i686
[10:13:41]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[10:13:41]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[10:13:41]      CPUs: 1 Logical, 1 Physical
[10:13:41]    Memory: 3.99 GB
[10:13:41]   Threads: Linux
[10:13:41] ********************************************************************************
[10:13:41] Project: 10013 (Run 3619, Clone 0, Gen 1)
[10:13:41] Digital signatures verified
[10:13:41] ERROR: Guru Meditation #4a7c68743e980792.2df06b68caaa7f76 (3062724.3062724) 'work/03/ww.dcd'
[10:13:41] WARNING: Unexpected exit() call
[10:13:41] WARNING: Unexpected exit from science code
[10:13:41] Saving result file logfile_03.txt
[10:13:41] Saving result file checkpt
[10:13:41] Saving result file checkpt.crc
[10:13:41] Saving result file log.txt
[10:13:44] Saving result file protomol.conf
[10:13:44] Saving result file ww.80.pos
[10:13:44] Saving result file ww.80.vel
[10:13:44] ERROR: Guru Meditation #4a7c68743e980792.2df06b68caaa7f76 (3062724.3062724) 'work/03/ww.dcd'
[10:13:44] CoreStatus = 70 (112)
[10:13:44] + The core could not validate the current work unit for processing.
[10:13:44] Deleting current work unit & continuing...
[10:13:44] - Preparing to get new work unit...
[10:13:44] + Attempting to get work packet
[10:13:44] - Connecting to assignment server
[10:13:44] - Successful: assigned to (129.74.85.15).
[10:13:44] + News From Folding@Home: Welcome to Folding@Home
[10:13:45] Loaded queue successfully.
[10:13:47] + Closed connections
[10:13:52] 
[10:13:52] + Processing work unit
[10:13:52] Core required: FahCore_b4.exe
[10:13:52] Core found.
[10:13:52] Working on Unit 04 [April 9 10:13:52]
[10:13:52] + Working ...
[10:13:55] *********************** Log Started 09/Apr/2010 10:13:55 ***********************
[10:13:55] ************************** ProtoMol Folding@Home Core **************************
[10:13:55]   Version: 23
[10:13:55]      Type: 180
[10:13:55]      Core: ProtoMol
[10:13:55]   Website: http://folding.stanford.edu/
[10:13:55] Copyright: (c) 2009 Stanford University
[10:13:55]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[10:13:55]      Args: -dir work/ -suffix 04 -priority 96 -checkpoint 30 -forceasm -lifeline
[10:13:55]            30942 -version 602
[10:13:55] ************************************ Build *************************************
[10:13:55]      Date: Mar 21 2010
[10:13:55]      Time: 10:27:10
[10:13:55]  Revision: 1789
[10:13:55]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[10:13:55]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[10:13:55]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[10:13:55]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[10:13:55]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[10:13:55]  Platform: Linux 2.4.27-3-386
[10:13:55]      Bits: 32
[10:13:55]      Mode: Release
[10:13:55] ************************************ System ************************************
[10:13:55]        OS: Linux 2.6.16 i686
[10:13:55]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[10:13:55]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[10:13:55]      CPUs: 1 Logical, 1 Physical
[10:13:55]    Memory: 3.99 GB
[10:13:55]   Threads: Linux
[10:13:55] ********************************************************************************
[10:13:55] Project: 10009 (Run 3768, Clone 0, Gen 1)
[10:13:55] Reading tar file par_all27_prot_lipid.inp
[10:13:55] Reading tar file scpismQuartic.inp
[10:13:55] Reading tar file par_all27_prot_lipid.inp
[10:13:55] Reading tar file scpismQuartic.inp
[10:13:55] Reading tar file ww_structure_14_charm.pdb
[10:13:55] Reading tar file ww_structure_14_charm.psf
[10:13:55] Reading tar file ww_structure_14_charm.vel
[10:13:55] Reading tar file checkpt
[10:13:55] Reading tar file ww_structure_14_charm.72.pos
[10:13:55] Reading tar file ww_structure_14_charm.72.vel
[10:13:55] Reading tar file protomol.conf
[10:13:55] Reading tar file core.xml
[10:13:55] Digital signatures verified
[10:13:55] Completed 0 out of 499375 steps (0%)
[10:23:53] Completed 5000 out of 499375 steps (1%)
[10:33:46] Completed 10000 out of 499375 steps (2%)
[10:43:32] Completed 15000 out of 499375 steps (3%)
[10:52:57] Completed 20000 out of 499375 steps (4%)
[11:02:17] Completed 25000 out of 499375 steps (5%)
[11:12:03] Completed 30000 out of 499375 steps (6%)
[11:21:38] Completed 35000 out of 499375 steps (7%)
[11:31:04] Completed 40000 out of 499375 steps (8%)
[11:40:33] Completed 45000 out of 499375 steps (9%)
[11:50:00] Completed 50000 out of 499375 steps (10%)
[11:59:26] Completed 55000 out of 499375 steps (11%)
[12:09:04] Completed 60000 out of 499375 steps (12%)
[12:18:46] Completed 65000 out of 499375 steps (13%)
[12:28:27] Completed 70000 out of 499375 steps (14%)
[12:37:30] Completed 74900 out of 499375 steps (14%)
[12:46:58] Completed 79900 out of 499375 steps (16%)
[12:56:23] Completed 84900 out of 499375 steps (17%)
[13:06:06] Completed 89900 out of 499375 steps (18%)
[13:15:23] Completed 94900 out of 499375 steps (19%)
[13:25:00] Completed 99900 out of 499375 steps (20%)
[13:34:34] Completed 104900 out of 499375 steps (21%)
[13:44:11] Completed 109900 out of 499375 steps (22%)
[13:54:04] Completed 114900 out of 499375 steps (23%)
[14:03:54] Completed 119900 out of 499375 steps (24%)
[14:13:52] Completed 124900 out of 499375 steps (25%)
[14:23:23] Completed 129900 out of 499375 steps (26%)
[14:33:00] Completed 134900 out of 499375 steps (27%)
[14:42:59] Completed 139900 out of 499375 steps (28%)
[14:52:42] Completed 144800 out of 499375 steps (28%)
[15:02:30] Completed 149800 out of 499375 steps (29%)
[15:12:30] Completed 154800 out of 499375 steps (30%)
[15:22:20] Completed 159800 out of 499375 steps (32%)
[15:32:13] Completed 164800 out of 499375 steps (33%)
[15:42:11] Completed 169800 out of 499375 steps (34%)
[15:51:49] Completed 174800 out of 499375 steps (35%)
[16:01:55] Completed 179800 out of 499375 steps (36%)
[16:11:36] Completed 184800 out of 499375 steps (37%)
[16:21:01] Completed 189800 out of 499375 steps (38%)
[16:30:45] Completed 194800 out of 499375 steps (39%)
[16:40:38] Completed 199800 out of 499375 steps (40%)
[16:50:30] Completed 204800 out of 499375 steps (41%)
[17:00:10] Completed 209800 out of 499375 steps (42%)
[17:09:49] Completed 214700 out of 499375 steps (42%)
[17:19:23] Completed 219700 out of 499375 steps (43%)
[17:29:05] Completed 224700 out of 499375 steps (44%)
[17:38:59] Completed 229700 out of 499375 steps (45%)
[17:48:36] Completed 234700 out of 499375 steps (46%)
[17:58:05] Completed 239700 out of 499375 steps (48%)
[18:07:49] Completed 244700 out of 499375 steps (49%)
[18:17:29] Completed 249700 out of 499375 steps (50%)
[18:27:39] Completed 254700 out of 499375 steps (51%)
[18:37:53] Completed 259700 out of 499375 steps (52%)
[18:48:05] Completed 264700 out of 499375 steps (53%)
[18:58:04] Completed 269700 out of 499375 steps (54%)
[19:08:16] Completed 274700 out of 499375 steps (55%)
[19:18:27] Completed 279700 out of 499375 steps (56%)
[19:29:16] Completed 284700 out of 499375 steps (57%)
[19:39:17] Completed 289600 out of 499375 steps (57%)
[19:49:30] Completed 294600 out of 499375 steps (58%)
[19:59:40] Completed 299600 out of 499375 steps (59%)
[20:09:39] Completed 304600 out of 499375 steps (60%)
[20:19:38] Completed 309600 out of 499375 steps (61%)
[20:29:45] Completed 314600 out of 499375 steps (62%)
[20:39:42] Completed 319600 out of 499375 steps (64%)
[20:50:04] Completed 324600 out of 499375 steps (65%)
[21:00:06] Completed 329600 out of 499375 steps (66%)
[21:10:04] Completed 334600 out of 499375 steps (67%)
[21:20:09] Completed 339600 out of 499375 steps (68%)
[21:30:40] Completed 344600 out of 499375 steps (69%)
[21:41:06] Completed 349600 out of 499375 steps (70%)
[21:52:07] Completed 354600 out of 499375 steps (71%)
[22:02:47] Completed 359500 out of 499375 steps (71%)
[22:12:57] Completed 364500 out of 499375 steps (72%)
[22:22:51] Completed 369500 out of 499375 steps (73%)
[22:32:34] Completed 374500 out of 499375 steps (74%)
[22:42:32] Completed 379500 out of 499375 steps (75%)
[22:52:24] Completed 384500 out of 499375 steps (76%)
[23:02:15] Completed 389500 out of 499375 steps (77%)
[23:12:19] Completed 394500 out of 499375 steps (78%)
[23:22:02] Completed 399500 out of 499375 steps (80%)
[23:31:57] Completed 404500 out of 499375 steps (81%)
[23:41:28] Completed 409500 out of 499375 steps (82%)
[23:51:19] Completed 414500 out of 499375 steps (83%)
[00:01:22] Completed 419500 out of 499375 steps (84%)
[00:11:03] Completed 424500 out of 499375 steps (85%)
[00:20:37] Completed 429400 out of 499375 steps (85%)
[00:30:18] Completed 434400 out of 499375 steps (86%)
[00:40:04] Completed 439400 out of 499375 steps (87%)
[00:49:32] Completed 444400 out of 499375 steps (88%)
[00:59:23] Completed 449400 out of 499375 steps (89%)
[01:08:58] Completed 454400 out of 499375 steps (90%)
[01:18:25] Completed 459400 out of 499375 steps (91%)
[01:28:05] Completed 464400 out of 499375 steps (92%)
[01:37:41] Completed 469400 out of 499375 steps (93%)
[01:47:03] Completed 474400 out of 499375 steps (94%)
[01:56:37] Completed 479400 out of 499375 steps (96%)
[02:06:02] Completed 484400 out of 499375 steps (97%)
[02:15:20] Completed 489400 out of 499375 steps (98%)
[02:24:26] Completed 494400 out of 499375 steps (99%)
[02:33:53] Completed 499300 out of 499375 steps (99%)
[02:34:02] Saving result file logfile_04.txt
[02:34:02] Saving result file checkpt
[02:34:02] Saving result file checkpt.crc
[02:34:02] Saving result file log.txt
[02:34:06] Saving result file protomol.conf
[02:34:06] Saving result file ww.dcd
[02:34:07] Saving result file ww_structure_14_charm.105.pos
[02:34:07] Saving result file ww_structure_14_charm.105.vel
[02:34:07] Folding@home Core Shutdown: FINISHED_UNIT
[02:34:07] CoreStatus = 64 (100)
[02:34:07] Sending work to server
[02:34:07] + -oneunit flag given and have now finished a unit. Exiting.- Preparing to get new work unit...
[02:34:07] + Attempting to get work packet
[02:34:07] - Connecting to assignment server

Folding@Home Client Shutdown.


--- Opening Log file [April 10 05:11:13] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -verbosity 9 -oneunit -freeBSD 

[05:11:13] - Ask before connecting: No
[05:11:13] - User name: ironTom (Team 11743)
[05:11:13] - User ID: 5245122D2
[05:11:13] - Machine ID: 5
[05:11:13] 
[05:11:13] Loaded queue successfully.
[05:11:13] - Preparing to get new work unit...
[05:11:13] + Attempting to get work packet
[05:11:13] - Autosending finished units...
[05:11:13] - Will indicate memory of 4084 MB
[05:11:13] Trying to send all finished work units
[05:11:13] - Detect CPU.- Read packet limit of 540015616...  Vendor: AuthenticAMD, Family: 15, Model: 4, Stepping: 2
Set to 524286976.
[05:11:13] - Connecting to assignment server
[05:11:13] Connecting to http://assign.stanford.edu:8080/
[05:11:13] Posted data.
[05:11:13] Initial: 4A81; - Successful: assigned to (129.74.85.15).
[05:11:13] + News From Folding@Home: Welcome to Folding@Home
[05:11:13] Loaded queue successfully.
[05:11:13] Connecting to http://129.74.85.15:8080/
[05:11:15] Posted data.
[05:11:15] Initial: 0000; - Receiving payload (expected size: 79426)
[05:11:16] - Downloaded at ~77 kB/s
[05:11:16] - Averaged speed for that direction ~169 kB/s
[05:11:16] + Received work.
[05:11:16] + Closed connections
[05:11:16] 
[05:11:16] + Processing work unit
[05:11:16] Core required: FahCore_b4.exe
[05:11:16] Core found.
[05:11:16] Working on Unit 05 [April 10 05:11:16]
[05:11:16] + Working ...
[05:11:16] - Calling './FahCore_b4.exe -dir work/ -suffix 05 -priority 96 -checkpoint 30 -verbose -lifeline 34072 -version 602'

[05:11:16] *********************** Log Started 10/Apr/2010 05:11:16 ***********************
[05:11:16] ************************** ProtoMol Folding@Home Core **************************
[05:11:16]   Version: 23
[05:11:16]      Type: 180
[05:11:16]      Core: ProtoMol
[05:11:16]   Website: http://folding.stanford.edu/
[05:11:16] Copyright: (c) 2009 Stanford University
[05:11:16]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[05:11:16]      Args: -dir work/ -suffix 05 -priority 96 -checkpoint 30 -verbose -lifeline
[05:11:16]            34072 -version 602
[05:11:16] ************************************ Build *************************************
[05:11:16]      Date: Mar 21 2010
[05:11:16]      Time: 10:27:10
[05:11:16]  Revision: 1789
[05:11:16]  Compiler: Intel(R) C++ g++ 4.1 mode 1110
[05:11:16]   Options: -std=gnu++98 -mia32 -O3 -funroll-loops
[05:11:16]            -axSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 -restrict
[05:11:16]   Defines: NDEBUG _REENTRANT HAVE_GEEKINFO HAVE_PTHREADS HAVE_PTHREADS
[05:11:16]            HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_LAPACK
[05:11:16]  Platform: Linux 2.4.27-3-386
[05:11:16]      Bits: 32
[05:11:16]      Mode: Release
[05:11:16] ************************************ System ************************************
[05:11:16]        OS: Linux 2.6.16 i686
[05:11:16]       CPU: Quad-Core AMD Opteron(tm) Processor 2382
[05:11:16]    CPU ID: AuthenticAMD Family 16 Model 4 Stepping 2
[05:11:16]      CPUs: 1 Logical, 1 Physical
[05:11:16]    Memory: 3.99 GB
[05:11:16]   Threads: Linux
[05:11:16] ********************************************************************************
[05:11:16] Project: 10014 (Run 4406, Clone 0, Gen 1)
[05:11:16] Reading tar file par_all27_prot_lipid.inp
[05:11:16] Reading tar file scpismQuartic.inp
[05:11:16] Reading tar file ww.pdb
[05:11:16] Reading tar file ww.psf
[05:11:16] Reading tar file checkpt
[05:11:16] Reading tar file ww.61.pos
[05:11:16] Reading tar file ww.61.vel
[05:11:16] Reading tar file protomol.conf
[05:11:16] Reading tar file core.xml
[05:11:16] Digital signatures verified
[05:11:17] Completed 0 out of 499375 steps (0%)
[05:11:17] GUI Server started
[05:21:08] Completed 5000 out of 499375 steps (1%)
[05:30:29] Completed 10000 out of 499375 steps (2%)
[05:40:21] Completed 15000 out of 499375 steps (3%)
[05:50:33] Completed 20000 out of 499375 steps (4%)
[06:00:31] Completed 25000 out of 499375 steps (5%)
[06:10:17] Completed 30000 out of 499375 steps (6%)
[06:20:42] Completed 35000 out of 499375 steps (7%)
[06:30:39] Completed 40000 out of 499375 steps (8%)
[06:41:09] Completed 45000 out of 499375 steps (9%)
[06:51:15] Completed 50000 out of 499375 steps (10%)
[07:01:08] Completed 55000 out of 499375 steps (11%)
[07:10:57] Completed 60000 out of 499375 steps (12%)
[07:21:04] Completed 65000 out of 499375 steps (13%)
[07:31:18] Completed 70000 out of 499375 steps (14%)
[07:41:16] Completed 74900 out of 499375 steps (14%)
[07:51:09] Completed 79900 out of 499375 steps (16%)
[08:01:05] Completed 84900 out of 499375 steps (17%)
[08:10:19] Completed 89900 out of 499375 steps (18%)
[08:19:47] Completed 94900 out of 499375 steps (19%)
[08:28:59] Completed 99900 out of 499375 steps (20%)
[08:37:44] Completed 104900 out of 499375 steps (21%)
[08:46:54] Completed 109900 out of 499375 steps (22%)
[08:55:26] Completed 114900 out of 499375 steps (23%)
[09:04:23] Completed 119900 out of 499375 steps (24%)
[09:13:39] Completed 124900 out of 499375 steps (25%)
[09:22:32] Completed 129900 out of 499375 steps (26%)
[09:31:45] Completed 134900 out of 499375 steps (27%)
[09:41:00] Completed 139900 out of 499375 steps (28%)
[09:49:57] Completed 144800 out of 499375 steps (28%)
[09:58:57] Completed 149800 out of 499375 steps (29%)
[10:07:59] Completed 154800 out of 499375 steps (30%)
[10:17:17] Completed 159800 out of 499375 steps (32%)
[10:26:18] Completed 164800 out of 499375 steps (33%)
[10:35:18] Completed 169800 out of 499375 steps (34%)
[10:43:56] Completed 174800 out of 499375 steps (35%)
[10:52:25] Completed 179800 out of 499375 steps (36%)
[11:01:05] Completed 184800 out of 499375 steps (37%)
[11:09:47] Completed 189800 out of 499375 steps (38%)
[11:18:23] Completed 194800 out of 499375 steps (39%)
[11:26:43] Completed 199800 out of 499375 steps (40%)
[11:35:04] Completed 204800 out of 499375 steps (41%)
[11:43:33] Completed 209800 out of 499375 steps (42%)
[11:52:03] Completed 214700 out of 499375 steps (42%)
[12:00:42] Completed 219700 out of 499375 steps (43%)
[12:09:02] Completed 224700 out of 499375 steps (44%)
[12:17:39] Completed 229700 out of 499375 steps (45%)
[12:26:02] Completed 234700 out of 499375 steps (46%)
[12:34:45] Completed 239700 out of 499375 steps (48%)
[12:43:22] Completed 244700 out of 499375 steps (49%)
[12:52:05] Completed 249700 out of 499375 steps (50%)
[13:00:31] Completed 254700 out of 499375 steps (51%)
[13:09:25] Completed 259700 out of 499375 steps (52%)
[13:17:55] Completed 264700 out of 499375 steps (53%)
[13:26:05] Completed 269700 out of 499375 steps (54%)
[13:34:16] Completed 274700 out of 499375 steps (55%)
[13:42:20] Completed 279700 out of 499375 steps (56%)
[13:50:30] Completed 284700 out of 499375 steps (57%)
[13:58:34] Completed 289600 out of 499375 steps (57%)
[14:06:50] Completed 294600 out of 499375 steps (58%)
[14:15:32] Completed 299600 out of 499375 steps (59%)
[14:24:34] Completed 304600 out of 499375 steps (60%)
[14:33:43] Completed 309600 out of 499375 steps (61%)
[14:42:16] Completed 314600 out of 499375 steps (62%)
[14:51:12] Completed 319600 out of 499375 steps (64%)
[15:00:30] Completed 324600 out of 499375 steps (65%)
[15:09:24] Completed 329600 out of 499375 steps (66%)
[15:18:35] Completed 334600 out of 499375 steps (67%)
[15:27:54] Completed 339600 out of 499375 steps (68%)
[15:36:50] Completed 344600 out of 499375 steps (69%)
[15:45:54] Completed 349600 out of 499375 steps (70%)
[15:54:38] Completed 354600 out of 499375 steps (71%)
[16:03:03] Completed 359500 out of 499375 steps (71%)
[16:11:22] Completed 364500 out of 499375 steps (72%)
[16:19:45] Completed 369500 out of 499375 steps (73%)
[16:28:19] Completed 374500 out of 499375 steps (74%)
[16:37:11] Completed 379500 out of 499375 steps (75%)
[16:46:20] Completed 384500 out of 499375 steps (76%)
[16:55:22] Completed 389500 out of 499375 steps (77%)
[17:04:25] Completed 394500 out of 499375 steps (78%)
[17:13:47] Completed 399500 out of 499375 steps (80%)
[17:22:19] Completed 404500 out of 499375 steps (81%)
[17:30:39] Completed 409500 out of 499375 steps (82%)
[17:39:28] Completed 414500 out of 499375 steps (83%)
[17:48:25] Completed 419500 out of 499375 steps (84%)
[17:56:55] Completed 424500 out of 499375 steps (85%)
[18:05:05] Completed 429400 out of 499375 steps (85%)
[18:13:22] Completed 434400 out of 499375 steps (86%)
[18:21:43] Completed 439400 out of 499375 steps (87%)
[18:30:14] Completed 444400 out of 499375 steps (88%)
[18:39:10] Completed 449400 out of 499375 steps (89%)
[18:47:35] Completed 454400 out of 499375 steps (90%)
[18:56:13] Completed 459400 out of 499375 steps (91%)
[19:04:31] Completed 464400 out of 499375 steps (92%)
[19:13:02] Completed 469400 out of 499375 steps (93%)
[19:21:45] Completed 474400 out of 499375 steps (94%)
[19:30:20] Completed 479400 out of 499375 steps (96%)
[19:39:21] Completed 484400 out of 499375 steps (97%)
[19:48:04] Completed 489400 out of 499375 steps (98%)
[19:56:53] Completed 494400 out of 499375 steps (99%)
[20:05:19] Completed 499300 out of 499375 steps (99%)
[20:05:27] GUI Server closing
[20:05:27] GUI Server exiting
[20:05:27] Saving result file logfile_05.txt
[20:05:27] Saving result file checkpt
[20:05:27] Saving result file checkpt.crc
[20:05:27] Saving result file log.txt
[20:05:31] Saving result file protomol.conf
[20:05:31] Saving result file ww.91.pos
[20:05:31] Saving result file ww.91.vel
[20:05:31] Saving result file ww.dcd
[20:05:32] Folding@home Core Shutdown: FINISHED_UNIT
[20:05:32] CoreStatus = 64 (100)
[20:05:32] Unit 5 finished with 98 percent of time to deadline remaining.
[20:05:32] Updated performance fraction: 0.982641
[20:05:32] Sending work to server
[20:05:32] - Already sending work
[20:05:32] Trying to send all finished work units
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] - Already sending work
[20:05:32] + Sent 0 of 9 completed units to the server
[20:05:32] + -oneunit flag given and have now finished a unit. Exiting.- Preparing to get new work unit...
[20:05:32] ***** Got a SIGTERM signal (15)
[20:05:32] + Attempting to get work packet
[20:05:32] Killing all core threads

Folding@Home Client Shutdown.
[20:05:32] - Will indicate memory of 4084 MB

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Sat Apr 10, 2010 10:20 pm

by IronTom

Just after that run I sent results manually and that worked?
so it seems to be some problem sending the wu to the server.

Code: Select all

[20:05:32] - Already sending work
[20:05:32] + Sent 0 of 9 completed units to the server
[20:05:32] + -oneunit flag given and have now finished a unit. Exiting.- Preparing to get new work unit...
[20:05:32] ***** Got a SIGTERM signal (15)
[20:05:32] + Attempting to get work packet
[20:05:32] Killing all core threads

Folding@Home Client Shutdown.
[20:05:32] - Will indicate memory of 4084 MB


--- Opening Log file [April 10 22:10:52] 


# Linux Console Edition #######################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/folder/folding_4
Executable: /home/folder/foldingathome/fah6
Arguments: -send all -freeBSD 

[22:10:52] - Ask before connecting: No
[22:10:52] - User name: ironTom (Team 11743)
[22:10:52] - User ID: 5245122D2D926AF4
[22:10:52] - Machine ID: 5
[22:10:52] 
[22:10:52] Loaded queue successfully.
[22:10:52] Attempting to return result(s) to server...
[22:10:52] - Read packet limit of 540015616... Set to 524286976.


[22:10:52] + Attempting to send results
[22:11:35] + Results successfully sent
[22:11:35] Thank you for your contribution to Folding@Home.
[22:11:35] + Number of Units Completed: 16

[22:11:36] - Read packet limit of 540015616... Set to 524286976.


[22:11:36] + Attempting to send results
[22:12:32] + Results successfully sent
[22:12:32] Thank you for your contribution to Folding@Home.
[22:12:32] + Number of Units Completed: 17

[22:12:33] - Read packet limit of 540015616... Set to 524286976.


[22:12:33] + Attempting to send results
[22:13:30] + Results successfully sent
[22:13:30] Thank you for your contribution to Folding@Home.
[22:13:30] + Number of Units Completed: 18

[22:13:31] - Read packet limit of 540015616... Set to 524286976.


[22:13:31] + Attempting to send results
[22:14:31] + Results successfully sent
[22:14:31] Thank you for your contribution to Folding@Home.
[22:14:31] + Number of Units Completed: 19

[22:14:32] - Read packet limit of 540015616... Set to 524286976.


[22:14:32] + Attempting to send results
[22:15:15] + Results successfully sent
[22:15:15] Thank you for your contribution to Folding@Home.
[22:15:15] + Number of Units Completed: 20

[22:15:16] - Read packet limit of 540015616... Set to 524286976.


[22:15:16] + Attempting to send results
[22:15:27] + Results successfully sent
[22:15:27] Thank you for your contribution to Folding@Home.
[22:15:27] + Number of Units Completed: 21

[22:15:28] - Read packet limit of 540015616... Set to 524286976.


[22:15:28] + Attempting to send results
[22:15:35] + Results successfully sent
[22:15:35] Thank you for your contribution to Folding@Home.
[22:15:35] + Number of Units Completed: 22

[22:15:35] - Read packet limit of 540015616... Set to 524286976.


[22:15:35] + Attempting to send results
[22:15:47] + Results successfully sent
[22:15:47] Thank you for your contribution to Folding@Home.
[22:15:47] + Number of Units Completed: 23

[22:15:48] - Read packet limit of 540015616... Set to 524286976.


[22:15:48] + Attempting to send results
[22:16:27] + Results successfully sent
[22:16:27] Thank you for your contribution to Folding@Home.
[22:16:27] + Number of Units Completed: 24


Folding@Home Client Shutdown.

Re: ProtoMol Core, FAH6.02 on freeBSD getting no ponts

Posted: Sun Apr 11, 2010 4:23 pm

by IronTom

Looks like it is working now. It had some thing to do with the Wu being stuck in the queue from
when the servers were down Easter weekend. Those Wu were from Gromacs Core. Then It started
working on the ProtoMol core. I suspect the new servers would not accept the old WU?

Uploaded them all manually and restarted all the cores now so I'll see how it proceeds.

Thank you all for your help.

[07:31:50] + Attempting to send results
[07:31:50] - Couldn't send HTTP request to server
[07:31:50] + Could not connect to Work Server (results)
[07:31:50] (171.67.108.17:8080)
[07:31:50] Could not transmit unit 06 to Collection server; keeping in queue.

[08:44:15] *------------------------------*
[08:44:15] Folding@Home Gromacs Core
[08:44:15] Version 1.90 (March 8, 2006)

[16:18:58] *********************** Log Started 06/Apr/2010 16:18:58 ***********************
[16:18:58] ************************** ProtoMol Folding@Home Core **************************
[16:18:58] Version: 23
[16:18:58] Type: 180
[16:18:58] Core: ProtoMol