Project: 2675 (Run 0, Clone 60, Gen 198) 11 hrs less than 1%
Posted: Wed Oct 21, 2009 10:22 pm
Code: Select all
[11:51:52] + Number of Units Completed: 22
[11:51:53] - Warning: Could not delete all work unit files (4): Core file absent
[11:51:53] Trying to send all finished work units
[11:51:53] + No unsent completed units remaining.
[11:51:53] - Preparing to get new work unit...
[11:51:53] + Attempting to get work packet
[11:51:53] - Will indicate memory of 1666 MB
[11:51:53] - Connecting to assignment server
[11:51:53] Connecting to http://assign.stanford.edu:8080/
[11:51:53] Posted data.
[11:51:53] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[11:51:53] + News From Folding@Home: Welcome to Folding@Home
[11:51:53] Loaded queue successfully.
[11:51:53] Connecting to http://171.64.65.56:8080/
[11:51:59] Posted data.
[11:51:59] Initial: 0000; - Receiving payload (expected size: 4845129)
[11:52:11] - Downloaded at ~394 kB/s
[11:52:11] - Averaged speed for that direction ~381 kB/s
[11:52:11] + Received work.
[11:52:11] Trying to send all finished work units
[11:52:11] + No unsent completed units remaining.
[11:52:11] + Closed connections
[11:52:11]
[11:52:11] + Processing work unit
[11:52:11] At least 4 processors must be requested.Core required: FahCore_a2.exe
[11:52:11] Core found.
[11:52:11] Working on queue slot 05 [October 21 11:52:11 UTC]
[11:52:11] + Working ...
[11:52:11] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 05 -checkpoint 10 -verbose -lifeline 3742 -version 624'
[11:52:11]
[11:52:11] *------------------------------*
[11:52:11] Folding@Home Gromacs SMP Core
[11:52:11] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[11:52:11]
[11:52:11] Preparing to commence simulation
[11:52:11] - Ensuring status. Please wait.
[11:52:12] Called DecompressByteArray: compressed_data_size=4844617 data_size=24001453, decompressed_data_size=24001453 diff=0
[11:52:12] - Digital signature verified
[11:52:12]
[11:52:12] Project: 2675 (Run 0, Clone 60, Gen 198)
[11:52:12]
[11:52:13] Assembly optimizations on if available.
[11:52:13] Entering M.D.
[11:52:22] Run 0, Clone 60, Gen 198)
[11:52:22]
[11:52:23] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=ubuntu
NNODES=4, MYRANK=3, HOSTNAME=ubuntu
NNODES=4, MYRANK=2, HOSTNAME=ubuntu
NNODES=4, MYRANK=0, HOSTNAME=ubuntu
NODEID=0 argc=20
NODEID=2 argc=20
NODEID=1 argc=20
NODEID=3 argc=20
Reading file work/wudata_05.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 68
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
WARNING: This run will generate roughly 3867 Mb of data
starting mdrun '22878 system in water'
49750000 steps, 99500.0 ps (continuing from step 7250000, 14500.0 ps).
[15:09:26] - Autosending finished units... [October 21 15:09:26 UTC]
[15:09:26] Trying to send all finished work units
[15:09:26] + No unsent completed units remaining.
[15:09:26] - Autosend completed
[21:09:26] - Autosending finished units... [October 21 21:09:26 UTC]
[21:09:26] Trying to send all finished work units
[21:09:26] + No unsent completed units remaining.
[21:09:26] - Autosend completed
^C[22:11:12] ***** Got an Activate signal (2)
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[22:11:12] Killing all core threads
Folding@Home Client Shutdown.
cormiem@ubuntu:~/folding$ [0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
./fah6 -smp -verbosity 9
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
2 cores detected
--- Opening Log file [October 21 22:11:50 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.24beta
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/cormiem/folding
Executable: ./fah6
Arguments: -smp -verbosity 9
[22:11:50] - Ask before connecting: No
[22:11:50] - User name: Martin_T7250 (Team 96377)
[22:11:50] - User ID: 2FC465931CC94671
[22:11:50] - Machine ID: 2
[22:11:50]
[22:11:50] Loaded queue successfully.
[22:11:50] - Autosending finished units... [October 21 22:11:50 UTC]
[22:11:50] Trying to send all finished work units
[22:11:50] + No unsent completed units remaining.
[22:11:50] - Autosend completed
[22:11:50]
[22:11:50] + Processing work unit
[22:11:50] At least 4 processors must be requested.Core required: FahCore_a2.exe
[22:11:50] Core found.
[22:11:50] Working on queue slot 05 [October 21 22:11:50 UTC]
[22:11:50] + Working ...
[22:11:50] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 05 -checkpoint 10 -verbose -lifeline 28762 -version 624'
[22:11:50]
[22:11:50] *------------------------------*
[22:11:50] Folding@Home Gromacs SMP Core
[22:11:50] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[22:11:50]
[22:11:50] Preparing to commence simulation
[22:11:50] - Ensuring status. Please wait.
[22:11:51] Called DecompressByteArray: compressed_data_size=4844617 data_size=24001453, decompressed_data_size=24001453 diff=0
[22:11:52] - Digital signature verified
[22:11:52]
[22:11:52] Project: 2675 (Run 0, Clone 60, Gen 198)
[22:11:52]
[22:11:52] Assembly optimizations on if available.
[22:11:52] Entering M.D.
[22:11:58] Using Gromacs checkpoints
[22:12:02]
[22:12:02] Entering M.D.
[22:12:08] Using Gromacs checkpoints
NNODES=4, MYRANK=1, HOSTNAME=ubuntu
NNODES=4, MYRANK=2, HOSTNAME=ubuntu
NNODES=4, MYRANK=3, HOSTNAME=ubuntu
NNODES=4, MYRANK=0, HOSTNAME=ubuntu
NODEID=0 argc=23
NODEID=1 argc=23
NODEID=2 argc=23
NODEID=3 argc=23
Reading file work/wudata_05.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 68
Reading checkpoint file work/wudata_05.cpt generated: Wed Oct 21 18:02:37 2009
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
WARNING: This run will generate roughly 3859 Mb of data
starting mdrun '22878 system in water'
49750000 steps, 99500.0 ps (continuing from step 7335130, 14670.3 ps).
[22:12:16] data_05.log
[22:12:16] Verified work/wudata_05.trr
[22:12:16] Verified work/wudata_05.xtc
[22:12:16] Verified work/wudata_05.edr
[22:12:17] Completed 85130 out of 42500000 steps (0%)
I will kill it and get something else, it will never complete on time, sad, 11 hours of power wasted.