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P2675 R3/C13/G159 Core status = 66 (102)

Posted: Mon Aug 24, 2009 1:16 pm
by BrokenWolf
The system tried to run it 3 times and errored out on the last run.

Code: Select all

NODEID=0 argc=22
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 4.0.99_development_20090425  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=1 argc=22
Reading file work/wudata_08.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=2 argc=22
NODEID=3 argc=22
Note: tpx file_version 48, software version 65

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
40000004 steps,  80000.0 ps (continuing from step 39750004,  79500.0 ps).

t = 79500.012 ps: Water molecule starting at atom 132199 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 79500.012 ps: Water molecule starting at atom 60856 can not be settled.
Check for bad contacts and/or reduce the timestep.
[09:08:23] Completed 0 out of 250000 steps  (0%)
[09:08:23]
[09:08:23] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[09:08:28] CoreStatus = 66 (102)
[09:08:28] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)[09:08:28] Killing all core threads

Folding@Home Client Shutdown.

Re: P2675 R3/C13/G159 Core status = 66 (102)

Posted: Tue Sep 15, 2009 1:19 am
by AtwaterFS
3 weeks later and I am getting exact same nonsense AD NAUSEUM - awesome...