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--- Opening Log file [August 13 17:47:02 UTC] 


# Linux SMP Console Edition ###################################################
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                       Folding@Home Client Version 6.24beta

                          http://folding.stanford.edu

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Launch directory: /home/bull45/fah
Executable: ./fah6
Arguments: -smp -verbosity 9 -advmethods 

[17:47:02] - Ask before connecting: No
[17:47:02] - User name: Bull45 (Team 51)
[17:47:02] - User ID: 1E23B84C75417B01
[17:47:02] - Machine ID: 1
[17:47:02] 
[17:47:02] Work directory not found. Creating...
[17:47:02] Could not open work queue, generating new queue...
[17:47:02] - Autosending finished units... [August 13 17:47:02 UTC]
[17:47:02] Trying to send all finished work units
[17:47:02] + No unsent completed units remaining.
[17:47:02] - Autosend completed
[17:47:02] - Preparing to get new work unit...
[17:47:02] + Attempting to get work packet
[17:47:02] - Will indicate memory of 941 MB
[17:47:02] - Connecting to assignment server
[17:47:02] Connecting to http://assign.stanford.edu:8080/
[17:47:03] Posted data.
[17:47:03] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[17:47:03] + News From Folding@Home: Welcome to Folding@Home
[17:47:03] Loaded queue successfully.
[17:47:03] Connecting to http://171.64.65.56:8080/
[17:47:09] Posted data.
[17:47:09] Initial: 0000; - Receiving payload (expected size: 4844103)
[17:47:28] - Downloaded at ~248 kB/s
[17:47:28] - Averaged speed for that direction ~248 kB/s
[17:47:28] + Received work.
[17:47:28] + Closed connections
[17:47:28] 
[17:47:28] + Processing work unit
[17:47:28] At least 4 processors must be requested.Core required: FahCore_a2.exe
[17:47:28] Core found.
[17:47:28] Working on queue slot 01 [August 13 17:47:28 UTC]
[17:47:28] + Working ...
[17:47:28] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 01 -checkpoint 5 -verbose -lifeline 24420 -version 624'

[17:47:28] 
[17:47:28] *------------------------------*
[17:47:28] Folding@Home Gromacs SMP Core
[17:47:28] Version 2.08 (Mon May 18 14:47:42 PDT 2009)
[17:47:28] 
[17:47:28] Preparing to commence simulation
[17:47:28] - Ensuring status. Please wait.
[17:47:29] Called DecompressByteArray: compressed_data_size=4843591 data_size=24023789, decompressed_data_size=24023789 diff=0
[17:47:29] - Digital signature verified
[17:47:29] 
[17:47:29] Project: 2677 (Run 9, Clone 26, Gen 25)
[17:47:29] 
[17:47:29] Assembly optimizations on if available.
[17:47:29] Entering M.D.
[17:47:39] (Run 9, Clone 26, Gen 25)
[17:47:39] 
[17:47:39] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=bull45-VM
NNODES=4, MYRANK=3, HOSTNAME=bull45-VM
NNODES=4, MYRANK=0, HOSTNAME=bull45-VM
NNODES=4, MYRANK=2, HOSTNAME=bull45-VM
NODEID=2 argc=22
NODEID=3 argc=22
NODEID=0 argc=22
NODEID=1 argc=22
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 4.0.99_development_20090425  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

Reading file work/wudata_01.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 65

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun 'IBX in water'
6500000 steps,  13000.0 ps (continuing from step 6250000,  12500.0 ps).

t = 12500.001 ps: Water molecule starting at atom 46051 can not be settled.
Check for bad contacts and/or reduce the timestep.

Step 6250001, time 12500 (ps)  LINCS WARNING
relative constraint deviation after LINCS:
rms 4260295767.407634, max 288901791744.000000 (between atoms 1119 and 1121)
bonds that rotated more than 90 degrees:
 atom 1 atom 2  angle  previous, current, constraint length
   1119   1120   90.0    0.1090 1267422976.0000      0.1090

t = 12500.003 ps: Water molecule starting at atom 129988 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 12500.003 ps: Water molecule starting at atom 66763 can not be settled.
Check for bad contacts and/or reduce the timestep.
[17:47:50] lding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[17:47:54] CoreStatus = 66 (102)
[17:47:54] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[17:47:54] Killing all core threads

Folding@Home Client Shutdown.