Project: 2677 (Run 15, Clone 99, Gen 9) seg fault
Posted: Tue May 19, 2009 11:16 am
log:
restarting client...
Code: Select all
[17:20:21]
[17:20:21] *------------------------------*
[17:20:21] Folding@Home Gromacs SMP Core
[17:20:21] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[17:20:21]
[17:20:21] Preparing to commence simulation
[17:20:21] - Ensuring status. Please wait.
[17:20:22] Called DecompressByteArray: compressed_data_size=4828594 data_size=24045917, decompressed_data_size=24045917 diff=0
[17:20:22] - Digital signature verified
[17:20:22]
[17:20:22] Project: 2677 (Run 15, Clone 99, Gen 9)
[17:20:22]
[17:20:23] Assembly optimizations on if available.
[17:20:23] Entering M.D.
[17:20:32] (Run 15, Clone 99, Gen 9)
[17:20:32]
[17:20:32] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=computenode
NNODES=4, MYRANK=0, HOSTNAME=computenode
NNODES=4, MYRANK=3, HOSTNAME=computenode
NNODES=4, MYRANK=2, HOSTNAME=computenode
NODEID=0 argc=20
NODEID=1 argc=20
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.0.99_development_20090307 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_07.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=2 argc=20
NODEID=3 argc=20
Note: tpx file_version 48, software version 64
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22869 system in water'
2500000 steps, 5000.0 ps (continuing from step 2250000, 4500.0 ps).
[17:29:20] pleted 2500 out of 250000 steps (1%)
[17:37:54] Completed 5000 out of 250000 steps (2%)
[17:46:33] Completed 7500 out of 250000 steps (3%)
[17:55:14] Completed 10000 out of 250000 steps (4%)
[18:03:57] Completed 12500 out of 250000 steps (5%)
[18:12:39] Completed 15000 out of 250000 steps (6%)
[18:21:21] Completed 17500 out of 250000 steps (7%)
[18:30:03] Completed 20000 out of 250000 steps (8%)
[18:38:46] Completed 22500 out of 250000 steps (9%)
[18:47:24] Completed 25000 out of 250000 steps (10%)
[18:56:02] Completed 27500 out of 250000 steps (11%)
[19:04:40] Completed 30000 out of 250000 steps (12%)
[19:13:18] Completed 32500 out of 250000 steps (13%)
[19:21:56] Completed 35000 out of 250000 steps (14%)
[19:27:45] - Autosending finished units... [May 18 19:27:45 UTC]
[19:27:45] Trying to send all finished work units
[19:27:45] Project: 2671 (Run 24, Clone 63, Gen 33)
[19:27:45] + Attempting to send results [May 18 19:27:45 UTC]
[19:27:45] - Reading file work/wuresults_06.dat from core
[19:27:46] (Read 52753796 bytes from disk)
[19:27:46] Connecting to http://171.67.108.24:8080/
[19:30:34] Completed 37500 out of 250000 steps (15%)
[19:37:03] Posted data.
[19:37:04] Initial: 0000; - Uploaded at ~91 kB/s
[19:37:11] - Averaged speed for that direction ~94 kB/s
[19:37:11] + Results successfully sent
[19:37:11] Thank you for your contribution to Folding@Home.
[19:37:11] + Number of Units Completed: 90
[19:37:14] + Sent 1 of 1 completed units to the server
[19:37:14] - Autosend completed
[19:39:11] Completed 40000 out of 250000 steps (16%)
[19:47:48] Completed 42500 out of 250000 steps (17%)
[19:56:26] Completed 45000 out of 250000 steps (18%)
[20:05:04] Completed 47500 out of 250000 steps (19%)
[20:13:44] Completed 50000 out of 250000 steps (20%)
[20:22:24] Completed 52500 out of 250000 steps (21%)
[20:31:06] Completed 55000 out of 250000 steps (22%)
[20:39:46] Completed 57500 out of 250000 steps (23%)
[20:48:27] Completed 60000 out of 250000 steps (24%)
[20:57:08] Completed 62500 out of 250000 steps (25%)
[21:05:50] Completed 65000 out of 250000 steps (26%)
[21:14:35] Completed 67500 out of 250000 steps (27%)
[21:23:19] Completed 70000 out of 250000 steps (28%)
[21:32:03] Completed 72500 out of 250000 steps (29%)
[21:40:48] Completed 75000 out of 250000 steps (30%)
[21:49:33] Completed 77500 out of 250000 steps (31%)
[21:58:17] Completed 80000 out of 250000 steps (32%)
[22:07:02] Completed 82500 out of 250000 steps (33%)
[22:15:47] Completed 85000 out of 250000 steps (34%)
[22:24:31] Completed 87500 out of 250000 steps (35%)
[22:33:15] Completed 90000 out of 250000 steps (36%)
[22:41:59] Completed 92500 out of 250000 steps (37%)
[22:50:45] Completed 95000 out of 250000 steps (38%)
[22:59:32] Completed 97500 out of 250000 steps (39%)
[23:08:19] Completed 100000 out of 250000 steps (40%)
[23:17:05] Completed 102500 out of 250000 steps (41%)
[23:25:50] Completed 105000 out of 250000 steps (42%)
[23:34:37] Completed 107500 out of 250000 steps (43%)
[23:43:23] Completed 110000 out of 250000 steps (44%)
[23:52:10] Completed 112500 out of 250000 steps (45%)
[00:00:56] Completed 115000 out of 250000 steps (46%)
[00:09:43] Completed 117500 out of 250000 steps (47%)
[00:18:30] Completed 120000 out of 250000 steps (48%)
[00:27:16] Completed 122500 out of 250000 steps (49%)
[00:36:02] Completed 125000 out of 250000 steps (50%)
[00:44:48] Completed 127500 out of 250000 steps (51%)
[00:53:35] Completed 130000 out of 250000 steps (52%)
[01:02:20] Completed 132500 out of 250000 steps (53%)
[01:11:03] Completed 135000 out of 250000 steps (54%)
[01:19:44] Completed 137500 out of 250000 steps (55%)
[01:28:27] Completed 140000 out of 250000 steps (56%)
[01:37:10] Completed 142500 out of 250000 steps (57%)
[01:37:14] - Autosending finished units... [May 19 01:37:14 UTC]
[01:37:14] Trying to send all finished work units
[01:37:14] + No unsent completed units remaining.
[01:37:14] - Autosend completed
[01:45:53] Completed 145000 out of 250000 steps (58%)
[01:54:36] Completed 147500 out of 250000 steps (59%)
[02:03:19] Completed 150000 out of 250000 steps (60%)
[02:12:02] Completed 152500 out of 250000 steps (61%)
[02:20:46] Completed 155000 out of 250000 steps (62%)
[02:29:29] Completed 157500 out of 250000 steps (63%)
[02:38:08] Completed 160000 out of 250000 steps (64%)
[02:46:48] Completed 162500 out of 250000 steps (65%)
[02:55:29] Completed 165000 out of 250000 steps (66%)
[03:04:11] Completed 167500 out of 250000 steps (67%)
[03:12:51] Completed 170000 out of 250000 steps (68%)
[03:21:34] Completed 172500 out of 250000 steps (69%)
[03:30:17] Completed 175000 out of 250000 steps (70%)
[03:38:58] Completed 177500 out of 250000 steps (71%)
[03:47:38] Completed 180000 out of 250000 steps (72%)
[03:56:19] Completed 182500 out of 250000 steps (73%)
[04:05:02] Completed 185000 out of 250000 steps (74%)
[04:13:44] Completed 187500 out of 250000 steps (75%)
[04:22:25] Completed 190000 out of 250000 steps (76%)
[04:31:06] Completed 192500 out of 250000 steps (77%)
[04:39:46] Completed 195000 out of 250000 steps (78%)
[04:48:27] Completed 197500 out of 250000 steps (79%)
[04:57:08] Completed 200000 out of 250000 steps (80%)
[05:05:48] Completed 202500 out of 250000 steps (81%)
[05:14:28] Completed 205000 out of 250000 steps (82%)
[05:23:08] Completed 207500 out of 250000 steps (83%)
[05:31:48] Completed 210000 out of 250000 steps (84%)
[05:40:29] Completed 212500 out of 250000 steps (85%)
[05:49:10] Completed 215000 out of 250000 steps (86%)
[05:57:50] Completed 217500 out of 250000 steps (87%)
[06:06:30] Completed 220000 out of 250000 steps (88%)
[06:09:17]
[06:09:17] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Quit
[06:09:21] CoreStatus = 66 (102)
[06:09:21] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[06:09:21] Killing all core threads
Folding@Home Client Shutdown.