[13:48:49] Warning: long 1-4 interactions
[13:48:50] Gromacs cannot continue further.
[13:48:50] Going to send back what have done.
It did not ever upload results; just retried the same unit several times, including re-downloading FahCore_a1.
I have submitted partial results using qfix, but you might have received the results from where I manually stopped it, (14%) instead of at the point where the unit dies. (20%)
Code: Select all
[08:50:54] + Processing work unit
[08:50:54] Work type a1 not eligible for variable processors
[08:50:54] Core required: FahCore_a1.exe
[08:50:54] Core found.
[08:50:54] Working on queue slot 02 [September 10 08:50:54 UTC]
[08:50:54] + Working ...
[08:50:54] - Calling 'mpiexec -np 4 -channel shm -env MPICH_USE_SMP_OPTIMIZATIONS 1 -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 02 -checkpoint 16 -verbose -lifeline 3664 -version 622'
[08:50:55]
[08:50:55] *------------------------------*
[08:50:55] Folding@Home Gromacs SMP Core
[08:50:55] Version 1.76 (February 23, 2008)
[08:50:55]
[08:50:55] Preparing to commence simulation
[08:50:55] - Ensuring status. Please wait.
[08:50:59] - Starting from initial work packet
[08:50:59]
[08:50:59] Project: 2665 (Run 0, Clone 8, Gen 48)
[08:50:59]
[08:50:59] Assembly optimizations on if available.
[08:50:59] Entering M.D.
[08:51:21] .2 percent)
[08:51:21] - Starting from initial work packet
[08:51:21]
[08:51:21] Project: 2665 (Run 0, Clone 8, Gen 48)
[08:51:21]
[08:51:22] Entering M.D.
[08:51:30] Protein: HGG in water
[08:51:30] Writing local files
[08:51:30] Extra SSE boost OK.
[09:06:30] es
[09:06:30] Completed 2500 out of 250000 steps (1 percent)
[09:21:22] Writing local files
[09:21:22] Completed 5000 out of 250000 steps (2 percent)
[09:35:51] Writing local files
[09:35:52] Completed 7500 out of 250000 steps (3 percent)
[09:50:13] Writing local files
[09:50:14] Completed 10000 out of 250000 steps (4 percent)
[10:04:35] Writing local files
[10:04:35] Completed 12500 out of 250000 steps (5 percent)
[10:18:58] Writing local files
[10:18:59] Completed 15000 out of 250000 steps (6 percent)
[10:33:21] Writing local files
[10:33:22] Completed 17500 out of 250000 steps (7 percent)
[10:47:43] Writing local files
[10:47:43] Completed 20000 out of 250000 steps (8 percent)
[11:02:04] Writing local files
[11:02:04] Completed 22500 out of 250000 steps (9 percent)
[11:16:24] Writing local files
[11:16:24] Completed 25000 out of 250000 steps (10 percent)
[11:30:45] Writing local files
[11:30:45] Completed 27500 out of 250000 steps (11 percent)
[11:45:09] Writing local files
[11:45:10] Completed 30000 out of 250000 steps (12 percent)
[11:59:35] Writing local files
[11:59:35] Completed 32500 out of 250000 steps (13 percent)
[12:14:00] Writing local files
[12:14:00] Completed 35000 out of 250000 steps (14 percent)
[12:28:26] Writing local files
[12:28:26] Completed 37500 out of 250000 steps (15 percent)
[12:42:50] Writing local files
[12:42:51] Completed 40000 out of 250000 steps (16 percent)
[12:56:37] - Autosending finished units... [September 10 12:56:37 UTC]
[12:56:37] Trying to send all finished work units
[12:56:37] + No unsent completed units remaining.
[12:56:37] - Autosend completed
[12:57:16] Writing local files
[12:57:16] Completed 42500 out of 250000 steps (17 percent)
[13:11:38] Writing local files
[13:11:38] Completed 45000 out of 250000 steps (18 percent)
[13:26:01] Writing local files
[13:26:01] Completed 47500 out of 250000 steps (19 percent)
[13:40:23] Writing local files
[13:40:23] Completed 50000 out of 250000 steps (20 percent)
[13:48:49] Warning: long 1-4 interactions
[13:48:50] Gromacs cannot continue further.
[13:48:50] Going to send back what have done.
[13:48:50] logfile size: 46745
[13:48:50] - Writing 47281 bytes of core data to disk...
[13:48:50] ... Done.
[13:48:50] - Failed to delete work/wudata_02.sas
[13:48:50] - Failed to delete work/wudata_02.goe
[13:48:50] Warning: check for stray files
[13:50:51]
[13:50:51] Folding@home Core Shutdown: EARLY_UNIT_END
[13:50:51]
[13:50:51] Folding@home Core Shutdown: EARLY_UNIT_END
[13:50:55] CoreStatus = 63 (99)
[13:50:55] + Error starting Folding@Home core.
[13:51:00]
[13:51:00] + Processing work unit
[13:51:00] Work type a1 not eligible for variable processors
[13:51:00] Core required: FahCore_a1.exe
[13:51:00] Core found.
[13:51:00] Working on queue slot 02 [September 10 13:51:00 UTC]
[13:51:00] + Working ...
[13:51:00] - Calling 'mpiexec -np 4 -channel shm -env MPICH_USE_SMP_OPTIMIZATIONS 1 -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 02 -checkpoint 16 -verbose -lifeline 3664 -version 622'
[13:51:00]
[13:51:00] *------------------------------*
[13:51:00] Folding@Home Gromacs SMP Core
[13:51:00] Version 1.76 (February 23, 2008)
[13:51:00]
[13:51:00] Preparing to commence simulation
[13:51:00] - Looking at optimizations...
[13:51:00] - Created dyn
[13:51:00] - Files status OK
[13:51:00]
[13:51:00] Folding@home Cor- Created dyn
[13:51:00] - Files status OK
[13:51:00] inalizing output
[13:51:00] OK
[13:53:00] utdown: MISSING_WORK_FILES
[13:53:00] Finalizing output
[13:53:00] ES
[13:53:00] Finalizing output
[13:53:04] CoreStatus = 1 (1)
[13:53:04] Client-core communications error: ERROR 0x1
[13:53:04] Deleting current work unit & continuing...
[13:55:24] - Warning: Could not delete all work unit files (2): Core returned invalid code
[13:55:24] Trying to send all finished work units
[13:55:24] + No unsent completed units remaining.
[13:55:24] - Preparing to get new work unit...
[13:55:24] + Attempting to get work packet
[13:55:24] - Will indicate memory of 2046 MB
[13:55:24] - Connecting to assignment server
[13:55:24] Connecting to http://assign.stanford.edu:8080/
[13:55:25] Posted data.
[13:55:25] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[13:55:25] + News From Folding@Home: Welcome to Folding@Home
[13:55:25] Loaded queue successfully.
[13:55:25] Connecting to http://171.64.65.64:8080/
[13:55:31] Posted data.
[13:55:31] Initial: 0000; - Receiving payload (expected size: 4760188)
[13:55:40] - Downloaded at ~516 kB/s
[13:55:40] - Averaged speed for that direction ~515 kB/s
[13:55:40] + Received work.
[13:55:40] + Closed connections
[13:55:45]
[13:55:45] + Processing work unit
[13:55:45] Work type a1 not eligible for variable processors
[13:55:45] Core required: FahCore_a1.exe
[13:55:45] Core found.
[13:55:45] Working on queue slot 03 [September 10 13:55:45 UTC]
[13:55:45] + Working ...
[13:55:45] - Calling 'mpiexec -np 4 -channel shm -env MPICH_USE_SMP_OPTIMIZATIONS 1 -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 03 -checkpoint 16 -verbose -lifeline 3664 -version 622'
[13:55:45]
[13:55:45] *------------------------------*
[13:55:45] Folding@Home Gromacs SMP Core
[13:55:45] Version 1.76 (February 23, 2008)
[13:55:45]
[13:55:45] Preparing to commence simulation
[13:55:45] - Ensuring status. Please wait.
[13:56:02] - Looking at optimizations...
[13:56:02] - Working with standard loops on this execution.
[13:56:02] - Created dyn
[13:56:02] - Files status OK
[13:56:14] - Expanded 4759676 -> 24426905 (decompressed 513.2 percent)
[13:56:14] - Starting from initial work packet
[13:56:14]
[13:56:14] Project: 2665 (Run 0, Clone 8, Gen 48)
[13:56:14]
[13:56:15] Entering M.D.
[13:56:22] Rejecting checkpoint
[13:56:23] Protein: HGG in water
[13:56:23] Writing local files
[13:56:30] Extra SSE boost OK.
[13:56:31] Writing local files
[13:56:31] Completed 0 out of 250000 steps (0 percent)
[14:10:44] Writing local files
[14:10:44] Completed 2500 out of 250000 steps (1 percent)
[14:24:58] Writing local files